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Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterations.
Microb Biotechnol. 2024 Apr;17(4):e14452. doi: 10.1111/1751-7915.14452.
Microb Biotechnol. 2024.
PMID: 38568755
Free PMC article.
Absolute Proteome Quantification in the Gas-Fermenting Acetogen Clostridium autoethanogenum.
Valgepea K, Talbo G, Takemori N, Takemori A, Ludwig C, Mahamkali V, Mueller AP, Tappel R, Köpke M, Simpson SD, Nielsen LK, Marcellin E.
Valgepea K, et al. Among authors: mahamkali v.
mSystems. 2022 Apr 26;7(2):e0002622. doi: 10.1128/msystems.00026-22. Epub 2022 Apr 6.
mSystems. 2022.
PMID: 35384696
Free PMC article.
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Analytical tools for unravelling the metabolism of gas-fermenting Clostridia.
Heffernan JK, Mahamkali V, Valgepea K, Marcellin E, Nielsen LK.
Heffernan JK, et al. Among authors: mahamkali v.
Curr Opin Biotechnol. 2022 Jun;75:102700. doi: 10.1016/j.copbio.2022.102700. Epub 2022 Feb 28.
Curr Opin Biotechnol. 2022.
PMID: 35240422
Free article.
Review.
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Chaperonin Abundance Enhances Bacterial Fitness.
Kumar CMS, Chugh K, Dutta A, Mahamkali V, Bose T, Mande SS, Mande SC, Lund PA.
Kumar CMS, et al. Among authors: mahamkali v.
Front Mol Biosci. 2021 Jul 26;8:669996. doi: 10.3389/fmolb.2021.669996. eCollection 2021.
Front Mol Biosci. 2021.
PMID: 34381811
Free PMC article.
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multiTFA: a Python package for multi-variate thermodynamics-based flux analysis.
Mahamkali V, McCubbin T, Beber ME, Noor E, Marcellin E, Nielsen LK.
Mahamkali V, et al.
Bioinformatics. 2021 Sep 29;37(18):3064-3066. doi: 10.1093/bioinformatics/btab151.
Bioinformatics. 2021.
PMID: 33682879
Free PMC article.
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Redox controls metabolic robustness in the gas-fermenting acetogen Clostridium autoethanogenum.
Mahamkali V, Valgepea K, de Souza Pinto Lemgruber R, Plan M, Tappel R, Köpke M, Simpson SD, Nielsen LK, Marcellin E.
Mahamkali V, et al.
Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):13168-13175. doi: 10.1073/pnas.1919531117. Epub 2020 May 29.
Proc Natl Acad Sci U S A. 2020.
PMID: 32471945
Free PMC article.
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Understanding the role of interactions between host and Mycobacterium tuberculosis under hypoxic condition: an in silico approach.
Bose T, Das C, Dutta A, Mahamkali V, Sadhu S, Mande SS.
Bose T, et al. Among authors: mahamkali v.
BMC Genomics. 2018 Jul 27;19(1):555. doi: 10.1186/s12864-018-4947-8.
BMC Genomics. 2018.
PMID: 30053801
Free PMC article.
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