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Fruit fly phylogeny imprints bacterial gut microbiota.
Ravigné V, Becker N, Massol F, Guichoux E, Boury C, Mahé F, Facon B. Ravigné V, et al. Among authors: mahe f. Evol Appl. 2022 May 3;15(10):1621-1638. doi: 10.1111/eva.13352. eCollection 2022 Oct. Evol Appl. 2022. PMID: 36330298 Free PMC article.
Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system.
Alonso P, Blondin L, Gladieux P, Mahé F, Sanguin H, Ferdinand R, Filloux D, Desmarais E, Cerqueira F, Jin B, Huang H, He X, Morel JB, Martin DP, Roumagnac P, Vernière C. Alonso P, et al. Among authors: mahe f. Environ Microbiol. 2020 Aug;22(8):3429-3445. doi: 10.1111/1462-2920.15114. Epub 2020 Jul 7. Environ Microbiol. 2020. PMID: 32510843 Free PMC article.
Predicting global distributions of eukaryotic plankton communities from satellite data.
Kaneko H, Endo H, Henry N, Berney C, Mahé F, Poulain J, Labadie K, Beluche O, El Hourany R; Tara Oceans Coordinators; Chaffron S, Wincker P, Nakamura R, Karp-Boss L, Boss E, Bowler C, de Vargas C, Tomii K, Ogata H. Kaneko H, et al. Among authors: mahe f. ISME Commun. 2023 Sep 22;3(1):101. doi: 10.1038/s43705-023-00308-7. ISME Commun. 2023. PMID: 37740029 Free PMC article.
pr2-primers: An 18S rRNA primer database for protists.
Vaulot D, Geisen S, Mahé F, Bass D. Vaulot D, et al. Among authors: mahe f. Mol Ecol Resour. 2022 Jan;22(1):168-179. doi: 10.1111/1755-0998.13465. Epub 2021 Jul 29. Mol Ecol Resour. 2022. PMID: 34251760
metaXplor: an interactive viral and microbial metagenomic data manager.
Sempéré G, Pétel A, Abbé M, Lefeuvre P, Roumagnac P, Mahé F, Baurens G, Filloux D. Sempéré G, et al. Among authors: mahe f. Gigascience. 2021 Feb 2;10(2):giab001. doi: 10.1093/gigascience/giab001. Gigascience. 2021. PMID: 33527143 Free PMC article.
Swarm v3: towards tera-scale amplicon clustering.
Mahé F, Czech L, Stamatakis A, Quince C, de Vargas C, Dunthorn M, Rognes T. Mahé F, et al. Bioinformatics. 2021 Dec 22;38(1):267-269. doi: 10.1093/bioinformatics/btab493. Bioinformatics. 2021. PMID: 34244702 Free PMC article.
Seasonal dynamics of marine protist communities in tidally mixed coastal waters.
Caracciolo M, Rigaut-Jalabert F, Romac S, Mahé F, Forsans S, Gac JP, Arsenieff L, Manno M, Chaffron S, Cariou T, Hoebeke M, Bozec Y, Goberville E, Le Gall F, Guilloux L, Baudoux AC, de Vargas C, Not F, Thiébaut E, Henry N, Simon N. Caracciolo M, et al. Among authors: mahe f. Mol Ecol. 2022 Jul;31(14):3761-3783. doi: 10.1111/mec.16539. Epub 2022 Jun 16. Mol Ecol. 2022. PMID: 35593305 Free PMC article.
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