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A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing.
Petrillo M, Fabbri M, Kagkli DM, Querci M, Van den Eede G, Alm E, Aytan-Aktug D, Capella-Gutierrez S, Carrillo C, Cestaro A, Chan KG, Coque T, Endrullat C, Gut I, Hammer P, Kay GL, Madec JY, Mather AE, McHardy AC, Naas T, Paracchini V, Peter S, Pightling A, Raffael B, Rossen J, Ruppé E, Schlaberg R, Vanneste K, Weber LM, Westh H, Angers-Loustau A. Petrillo M, et al. Among authors: madec jy. F1000Res. 2021 Feb 8;10:80. doi: 10.12688/f1000research.39214.2. eCollection 2021. F1000Res. 2021. PMID: 35847383 Free PMC article.
Antimicrobial Resistance in Streptococcus spp.
Haenni M, Lupo A, Madec JY. Haenni M, et al. Among authors: madec jy. Microbiol Spectr. 2018 Mar;6(2). doi: 10.1128/microbiolspec.ARBA-0008-2017. Microbiol Spectr. 2018. PMID: 29600772 Free article. Review.
Antimicrobial Resistance in Escherichia coli.
Poirel L, Madec JY, Lupo A, Schink AK, Kieffer N, Nordmann P, Schwarz S. Poirel L, et al. Among authors: madec jy. Microbiol Spectr. 2018 Jul;6(4). doi: 10.1128/microbiolspec.ARBA-0026-2017. Microbiol Spectr. 2018. PMID: 30003866 Free article. Review.
The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies.
Angers-Loustau A, Petrillo M, Bengtsson-Palme J, Berendonk T, Blais B, Chan KG, Coque TM, Hammer P, Heß S, Kagkli DM, Krumbiegel C, Lanza VF, Madec JY, Naas T, O'Grady J, Paracchini V, Rossen JWA, Ruppé E, Vamathevan J, Venturi V, Van den Eede G. Angers-Loustau A, et al. Among authors: madec jy. F1000Res. 2018 Apr 13;7:ISCB Comm J-459. doi: 10.12688/f1000research.14509.2. eCollection 2018. F1000Res. 2018. PMID: 30026930 Free PMC article. Review.
Harmonisation of in-silico next-generation sequencing based methods for diagnostics and surveillance.
Nunez-Garcia J, AbuOun M, Storey N, Brouwer MS, Delgado-Blas JF, Mo SS, Ellaby N, Veldman KT, Haenni M, Châtre P, Madec JY, Hammerl JA, Serna C, Getino M, La Ragione R, Naas T, Telke AA, Glaser P, Sunde M, Gonzalez-Zorn B, Ellington MJ, Anjum MF. Nunez-Garcia J, et al. Among authors: madec jy. Sci Rep. 2022 Aug 23;12(1):14372. doi: 10.1038/s41598-022-16760-9. Sci Rep. 2022. PMID: 35999234 Free PMC article.
207 results