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From FAANG to fork: application of highly annotated genomes to improve farmed animal production.
Clark EL, Archibald AL, Daetwyler HD, Groenen MAM, Harrison PW, Houston RD, Kühn C, Lien S, Macqueen DJ, Reecy JM, Robledo D, Watson M, Tuggle CK, Giuffra E. Clark EL, et al. Among authors: macqueen dj. Genome Biol. 2020 Nov 24;21(1):285. doi: 10.1186/s13059-020-02197-8. Genome Biol. 2020. PMID: 33234160 Free PMC article. Review. No abstract available.
Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.
Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium. Macqueen DJ, et al. BMC Genomics. 2017 Jun 27;18(1):484. doi: 10.1186/s12864-017-3862-8. BMC Genomics. 2017. PMID: 28655320 Free PMC article.
Harnessing genomics to fast-track genetic improvement in aquaculture.
Houston RD, Bean TP, Macqueen DJ, Gundappa MK, Jin YH, Jenkins TL, Selly SLC, Martin SAM, Stevens JR, Santos EM, Davie A, Robledo D. Houston RD, et al. Among authors: macqueen dj. Nat Rev Genet. 2020 Jul;21(7):389-409. doi: 10.1038/s41576-020-0227-y. Epub 2020 Apr 16. Nat Rev Genet. 2020. PMID: 32300217 Review.
The structural variation landscape in 492 Atlantic salmon genomes.
Bertolotti AC, Layer RM, Gundappa MK, Gallagher MD, Pehlivanoglu E, Nome T, Robledo D, Kent MP, Røsæg LL, Holen MM, Mulugeta TD, Ashton TJ, Hindar K, Sægrov H, Florø-Larsen B, Erkinaro J, Primmer CR, Bernatchez L, Martin SAM, Johnston IA, Sandve SR, Lien S, Macqueen DJ. Bertolotti AC, et al. Among authors: macqueen dj. Nat Commun. 2020 Oct 14;11(1):5176. doi: 10.1038/s41467-020-18972-x. Nat Commun. 2020. PMID: 33056985 Free PMC article.
Genome-Wide Association and Genomic Prediction of Growth Traits in the European Flat Oyster (Ostrea edulis).
Peñaloza C, Barria A, Papadopoulou A, Hooper C, Preston J, Green M, Helmer L, Kean-Hammerson J, Nascimento-Schulze JC, Minardi D, Gundappa MK, Macqueen DJ, Hamilton J, Houston RD, Bean TP. Peñaloza C, et al. Among authors: macqueen dj. Front Genet. 2022 Jul 15;13:926638. doi: 10.3389/fgene.2022.926638. eCollection 2022. Front Genet. 2022. PMID: 35983410 Free PMC article.
A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae.
Sambade IM, Casanova A, Blanco A, Gundappa MK, Bean TP, Macqueen DJ, Houston RD, Villalba A, Vera M, Kamermans P, Martínez P. Sambade IM, et al. Among authors: macqueen dj. Evol Appl. 2022 Jul 21;15(9):1408-1422. doi: 10.1111/eva.13446. eCollection 2022 Sep. Evol Appl. 2022. PMID: 36187184 Free PMC article.
71 results