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gcType: a high-quality type strain genome database for microbial phylogenetic and functional research.
Shi W, Sun Q, Fan G, Hideaki S, Moriya O, Itoh T, Zhou Y, Cai M, Kim SG, Lee JS, Sedlacek I, Arahal DR, Lucena T, Kawasaki H, Evtushenko L, Weir BS, Alexander S, Dénes D, Tanasupawat S, Eurwilaichitr L, Ingsriswang S, Gomez-Gil B, Hazbón MH, Riojas MA, Suwannachart C, Yao S, Vandamme P, Peng F, Chen Z, Liu D, Sun X, Zhang X, Zhou Y, Meng Z, Wu L, Ma J. Shi W, et al. Among authors: ma j. Nucleic Acids Res. 2021 Jan 8;49(D1):D694-D705. doi: 10.1093/nar/gkaa957. Nucleic Acids Res. 2021. PMID: 33119759 Free PMC article.
Website for avian flu information and bioinformatics.
Liu D, Liu QH, Wu LH, Liu B, Wu J, Lao YM, Li XJ, Gao GF, Ma JC. Liu D, et al. Among authors: ma jc. Sci China C Life Sci. 2009 May;52(5):470-3. doi: 10.1007/s11427-009-0065-9. Epub 2009 May 27. Sci China C Life Sci. 2009. PMID: 19471870 Review.
MycoBank gearing up for new horizons.
Robert V, Vu D, Amor AB, van de Wiele N, Brouwer C, Jabas B, Szoke S, Dridi A, Triki M, Ben Daoud S, Chouchen O, Vaas L, de Cock A, Stalpers JA, Stalpers D, Verkley GJ, Groenewald M, Dos Santos FB, Stegehuis G, Li W, Wu L, Zhang R, Ma J, Zhou M, Gorjón SP, Eurwilaichitr L, Ingsriswang S, Hansen K, Schoch C, Robbertse B, Irinyi L, Meyer W, Cardinali G, Hawksworth DL, Taylor JW, Crous PW. Robert V, et al. Among authors: ma j. IMA Fungus. 2013 Dec;4(2):371-9. doi: 10.5598/imafungus.2013.04.02.16. Epub 2013 Dec 17. IMA Fungus. 2013. PMID: 24563843 Free PMC article.
Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.
Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, De Vos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glöckner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, Ma J, Markowitz V, Moore ER, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang L, Zhou YG, Field D, Whitman WB, Garrity GM, Klenk HP. Kyrpides NC, et al. Among authors: ma j. PLoS Biol. 2014 Aug 5;12(8):e1001920. doi: 10.1371/journal.pbio.1001920. eCollection 2014 Aug. PLoS Biol. 2014. PMID: 25093819 Free PMC article.
Web resources for microbial data.
Sun Q, Liu L, Wu L, Li W, Liu Q, Zhang J, Liu D, Ma J. Sun Q, et al. Among authors: ma j. Genomics Proteomics Bioinformatics. 2015 Feb;13(1):69-72. doi: 10.1016/j.gpb.2015.01.008. Epub 2015 Feb 23. Genomics Proteomics Bioinformatics. 2015. PMID: 25721609 Free PMC article. Review.
World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide.
Wu L, Sun Q, Desmeth P, Sugawara H, Xu Z, McCluskey K, Smith D, Alexander V, Lima N, Ohkuma M, Robert V, Zhou Y, Li J, Fan G, Ingsriswang S, Ozerskaya S, Ma J. Wu L, et al. Among authors: ma j. Nucleic Acids Res. 2017 Jan 4;45(D1):D611-D618. doi: 10.1093/nar/gkw903. Epub 2016 Oct 7. Nucleic Acids Res. 2017. PMID: 28053166 Free PMC article.
The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species.
Wu L, McCluskey K, Desmeth P, Liu S, Hideaki S, Yin Y, Moriya O, Itoh T, Kim CY, Lee JS, Zhou Y, Kawasaki H, Hazbón MH, Robert V, Boekhout T, Lima N, Evtushenko L, Boundy-Mills K, Bunk B, Moore ERB, Eurwilaichitr L, Ingsriswang S, Shah H, Yao S, Jin T, Huang J, Shi W, Sun Q, Fan G, Li W, Li X, Kurtböke I, Ma J. Wu L, et al. Among authors: ma j. Gigascience. 2018 May 1;7(5):giy026. doi: 10.1093/gigascience/giy026. Gigascience. 2018. PMID: 29718202 Free PMC article.
Mycobacterial biomaterials and resources for researchers.
Hazbón MH, Rigouts L, Schito M, Ezewudo M, Kudo T, Itoh T, Ohkuma M, Kiss K, Wu L, Ma J, Hamada M, Strong M, Salfinger M, Daley CL, Nick JA, Lee JS, Rastogi N, Couvin D, Hurtado-Ortiz R, Bizet C, Suresh A, Rodwell T, Albertini A, Lacourciere KA, Deheer-Graham A, Alexander S, Russell JE, Bradford R, Riojas MA. Hazbón MH, et al. Among authors: ma j. Pathog Dis. 2018 Jun 1;76(4):fty042. doi: 10.1093/femspd/fty042. Pathog Dis. 2018. PMID: 29846561 Free PMC article. Review.
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