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2020 5
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2022 38
2023 10
2024 1

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85 results

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Page 1
Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey.
Lythgoe KA, Golubchik T, Hall M, House T, Cahuantzi R, MacIntyre-Cockett G, Fryer H, Thomson L, Nurtay A, Ghafani M, Buck D, Green A, Trebes A, Piazza P, Lonie LJ, Studley R, Rourke E, Smith D, Bashton M, Nelson A, Crown M, McCann C, Young GR, Andre Nunes Dos Santos R, Richards Z, Tariq A; Wellcome Sanger Institute COVID-19 Surveillance Team; COVID-19 Infection Survey Group, The COVID-19 Genomics UK (COG-UK) Consortium; Fraser C, Diamond I, Barrett J, Walker AS, Bonsall D. Lythgoe KA, et al. Proc Biol Sci. 2023 Oct 25;290(2009):20231284. doi: 10.1098/rspb.2023.1284. Epub 2023 Oct 18. Proc Biol Sci. 2023. PMID: 37848057 Free PMC article.
Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.
Fryer HR, Golubchik T, Hall M, Fraser C, Hinch R, Ferretti L, Thomson L, Nurtay A, Pellis L, House T, MacIntyre-Cockett G, Trebes A, Buck D, Piazza P, Green A, Lonie LJ, Smith D, Bashton M, Crown M, Nelson A, McCann CM, Adnan Tariq M, Elstob CJ, Nunes Dos Santos R, Richards Z, Xhang X, Hawley J, Lee MR, Carrillo-Barragan P, Chapman I, Harthern-Flint S; COVID-19 Genomics UK (COG-UK) consortium; Bonsall D, Lythgoe KA. Fryer HR, et al. PLoS Pathog. 2023 Aug 14;19(8):e1011461. doi: 10.1371/journal.ppat.1011461. eCollection 2023 Aug. PLoS Pathog. 2023. PMID: 37578971 Free PMC article.
COVID-19 risk mitigation in reopening mass cultural events: population-based observational study for the UK Events Research Programme in Liverpool City Region.
Burnside G, Cheyne CP, Leeming G, Humann M, Darby A, Green MA, Crozier A, Maskell S, O'Halloran K, Musi E, Carmi E, Khan N, Fisher D, Corcoran R, Dunning J, Edmunds WJ, Tharmaratnam K, Hughes DM, Malki-Epshtein L, Cook M, Roberts BM, Gallagher E, Howell K, Chand M, Kemp R, Boulter M, Fowler T, Semple MG, Coffey E, Ashton M; COVID-19 Genomics UK (COG-UK) Consortium; García-Fiñana M, Buchan IE. Burnside G, et al. J R Soc Med. 2024 Jan;117(1):11-23. doi: 10.1177/01410768231182389. Epub 2023 Jun 23. J R Soc Med. 2024. PMID: 37351911 Free PMC article.
Directions of change in intrinsic case severity across successive SARS-CoV-2 variant waves have been inconsistent.
Pascall DJ, Vink E, Blacow R, Bulteel N, Campbell A, Campbell R, Clifford S, Davis C, da Silva Filipe A, El Sakka N, Fjodorova L, Forrest R, Goldstein E, Gunson R, Haughney J, Holden MTG, Honour P, Hughes J, James E, Lewis T, MacLean O, McHugh M, Mollett G, Nyberg T, Onishi Y, Parcell B, Ray S, Robertson DL, Seaman SR, Shabaan S, Shepherd JG, Smollett K, Templeton K, Wastnedge E, Wilkie C, Williams T; COVID-19 Genomics UK (COG-UK) Consortium; Thomson EC. Pascall DJ, et al. J Infect. 2023 Aug;87(2):128-135. doi: 10.1016/j.jinf.2023.05.019. Epub 2023 Jun 1. J Infect. 2023. PMID: 37270070 Free PMC article.
Genomics-informed outbreak investigations of SARS-CoV-2 using civet.
O'Toole Á, Hill V, Jackson B, Dewar R, Sahadeo N, Colquhoun R, Rooke S, McCrone JT, Duggan K, McHugh MP, Nicholls SM, Poplawski R; COVID-19 Genomics UK (COG-UK) Consortium; COVID-19 Impact Project (Trinidad & Tobago Group); Aanensen D, Holden M, Connor T, Loman N, Goodfellow I, Carrington CVF, Templeton K, Rambaut A. O'Toole Á, et al. PLOS Glob Public Health. 2022 Dec 9;2(12):e0000704. doi: 10.1371/journal.pgph.0000704. eCollection 2022. PLOS Glob Public Health. 2022. PMID: 36962792 Free PMC article.
Combining viral genomics and clinical data to assess risk factors for severe COVID-19 (mortality, ICU admission, or intubation) amongst hospital patients in a large acute UK NHS hospital Trust.
Foxley-Marrable M, D'Cruz L, Meredith P, Glaysher S, Beckett AH, Goudarzi S, Fearn C, Cook KF, Loveson KF, Dent H, Paul H, Elliott S, Wyllie S, Lloyd A, Bicknell K, Lumley S, McNicholas J, Prytherch D; COVID-19 Genomics UK (COG-UK) consortium; Lundgren A, Graur O, Chauhan AJ, Robson SC. Foxley-Marrable M, et al. PLoS One. 2023 Mar 23;18(3):e0283447. doi: 10.1371/journal.pone.0283447. eCollection 2023. PLoS One. 2023. PMID: 36952555 Free PMC article.
Multiple pathways of SARS-CoV-2 nosocomial transmission uncovered by integrated genomic and epidemiological analyses during the second wave of the COVID-19 pandemic in the UK.
Cook KF, Beckett AH, Glaysher S, Goudarzi S, Fearn C, Loveson KF, Elliott S, Wyllie S, Lloyd A, Bicknell K, Lumley S, Chauhan AJ, Robson SC; COVID-19 Genomics UK (COG-UK) consortium. Cook KF, et al. Front Cell Infect Microbiol. 2023 Jan 20;12:1066390. doi: 10.3389/fcimb.2022.1066390. eCollection 2022. Front Cell Infect Microbiol. 2023. PMID: 36741977 Free PMC article.
SARS-CoV-2 variant biology: immune escape, transmission and fitness.
Carabelli AM, Peacock TP, Thorne LG, Harvey WT, Hughes J; COVID-19 Genomics UK Consortium; Peacock SJ, Barclay WS, de Silva TI, Towers GJ, Robertson DL. Carabelli AM, et al. Nat Rev Microbiol. 2023 Mar;21(3):162-177. doi: 10.1038/s41579-022-00841-7. Epub 2023 Jan 18. Nat Rev Microbiol. 2023. PMID: 36653446 Free PMC article. Review.
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK.
Hill V, Du Plessis L, Peacock TP, Aggarwal D, Colquhoun R, Carabelli AM, Ellaby N, Gallagher E, Groves N, Jackson B, McCrone JT, O'Toole Á, Price A, Sanderson T, Scher E, Southgate J, Volz E, Barclay WS, Barrett JC, Chand M, Connor T, Goodfellow I, Gupta RK, Harrison EM, Loman N, Myers R, Robertson DL, Pybus OG, Rambaut A. Hill V, et al. Virus Evol. 2022 Aug 26;8(2):veac080. doi: 10.1093/ve/veac080. eCollection 2022. Virus Evol. 2022. PMID: 36533153 Free PMC article.
85 results