Mäklin T - Search Results

1

Genomic and Phenotypic Characterization of Clostridium botulinum Isolates from an Infant Botulism Case Suggests Adaptation Signatures to the Gut.

Douillard FP, Derman Y, Woudstra C, Selby K, Mäklin T, Dorner MB, Saxén H, Dorner BG, Korkeala H, Lindström M. Douillard FP, et al. Among authors: maklin t. mBio. 2022 Jun 28;13(3):e0238421. doi: 10.1128/mbio.02384-21. Epub 2022 May 2. mBio. 2022. PMID: 35499308 Free PMC article.

2

Closing Clostridium botulinum Group III Genomes Using Long-Read Sequencing.

Woudstra C, Mäklin T, Derman Y, Bano L, Skarin H, Mazuet C, Honkela A, Lindström M. Woudstra C, et al. Among authors: maklin t. Microbiol Resour Announc. 2021 Jun 3;10(22):e0136420. doi: 10.1128/MRA.01364-20. Epub 2021 Jun 3. Microbiol Resour Announc. 2021. PMID: 34080898 Free PMC article.

3

Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes.

Alanko JN, Vuohtoniemi J, Mäklin T, Puglisi SJ. Alanko JN, et al. Among authors: maklin t. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i260-i269. doi: 10.1093/bioinformatics/btad233. Bioinformatics. 2023. PMID: 37387143 Free PMC article.

4

Bacterial genomic epidemiology with mixed samples.

Mäklin T, Kallonen T, Alanko J, Samuelsen Ø, Hegstad K, Mäkinen V, Corander J, Heinz E, Honkela A. Mäklin T, et al. Microb Genom. 2021 Nov;7(11):000691. doi: 10.1099/mgen.0.000691. Microb Genom. 2021. PMID: 34779765 Free PMC article.

5

Strong pathogen competition in neonatal gut colonisation.

Mäklin T, Thorpe HA, Pöntinen AK, Gladstone RA, Shao Y, Pesonen M, McNally A, Johnsen PJ, Samuelsen Ø, Lawley TD, Honkela A, Corander J. Mäklin T, et al. Nat Commun. 2022 Dec 1;13(1):7417. doi: 10.1038/s41467-022-35178-5. Nat Commun. 2022. PMID: 36456554 Free PMC article.

6

Identifying Bacterial Strains from Sequencing Data.

Mäklin T, Corander J, Honkela A. Mäklin T, et al. Methods Mol Biol. 2018;1807:1-7. doi: 10.1007/978-1-4939-8561-6_1. Methods Mol Biol. 2018. PMID: 30030799

7

High-resolution sweep metagenomics using fast probabilistic inference.

Mäklin T, Kallonen T, David S, Boinett CJ, Pascoe B, Méric G, Aanensen DM, Feil EJ, Baker S, Parkhill J, Sheppard SK, Corander J, Honkela A. Mäklin T, et al. Wellcome Open Res. 2021 Oct 8;5:14. doi: 10.12688/wellcomeopenres.15639.2. eCollection 2020. Wellcome Open Res. 2021. PMID: 34746439 Free PMC article.

8

Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing.

Pol S, Kallonen T, Mäklin T, Sar P, Hopkins J, Soeng S, Miliya T, Ling CL, Bentley SD, Corander J, Turner P. Pol S, et al. Among authors: maklin t. mBio. 2024 Apr 29:e0078424. doi: 10.1128/mbio.00784-24. Online ahead of print. mBio. 2024. PMID: 38682956 Free article.

9

A Novel Prophage-like Insertion Element within yabG Triggers Early Entry into Sporulation in Clostridium botulinum.

Douillard FP, Portinha IM, Derman Y, Woudstra C, Mäklin T, Dorner MB, Korkeala H, Henriques AO, Lindström M. Douillard FP, et al. Among authors: maklin t. Viruses. 2023 Dec 14;15(12):2431. doi: 10.3390/v15122431. Viruses. 2023. PMID: 38140671 Free PMC article.

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