Mäkelä J - Search Results

1

Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli.

Oliveira SM, Neeli-Venkata R, Goncalves NS, Santinha JA, Martins L, Tran H, Mäkelä J, Gupta A, Barandas M, Häkkinen A, Lloyd-Price J, Fonseca JM, Ribeiro AS. Oliveira SM, et al. Among authors: makela j. Mol Microbiol. 2016 Feb;99(4):686-99. doi: 10.1111/mmi.13257. Epub 2015 Nov 17. Mol Microbiol. 2016. PMID: 26507787 Free article.

2

Stochastic sequence-level model of coupled transcription and translation in prokaryotes.

Mäkelä J, Lloyd-Price J, Yli-Harja O, Ribeiro AS. Mäkelä J, et al. BMC Bioinformatics. 2011 Apr 26;12:121. doi: 10.1186/1471-2105-12-121. BMC Bioinformatics. 2011. PMID: 21521517 Free PMC article.

3

In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter.

Mäkelä J, Kandhavelu M, Oliveira SM, Chandraseelan JG, Lloyd-Price J, Peltonen J, Yli-Harja O, Ribeiro AS. Mäkelä J, et al. Nucleic Acids Res. 2013 Jul;41(13):6544-52. doi: 10.1093/nar/gkt350. Epub 2013 May 3. Nucleic Acids Res. 2013. PMID: 23644285 Free PMC article.

4

Rate-limiting steps in transcription dictate sensitivity to variability in cellular components.

Mäkelä J, Kandavalli V, Ribeiro AS. Mäkelä J, et al. Sci Rep. 2017 Sep 6;7(1):10588. doi: 10.1038/s41598-017-11257-2. Sci Rep. 2017. PMID: 28878283 Free PMC article.

5

Automatic detection of changes in the dynamics of delayed stochastic gene networks and in vivo production of RNA molecules in Escherichia coli.

Mäkelä J, Huttunen H, Kandhavelu M, Yli-Harja O, Ribeiro AS. Mäkelä J, et al. Bioinformatics. 2011 Oct 1;27(19):2714-20. doi: 10.1093/bioinformatics/btr471. Epub 2011 Aug 10. Bioinformatics. 2011. PMID: 21835771

6

Dynamics of transcription of closely spaced promoters in Escherichia coli, one event at a time.

Martins L, Mäkelä J, Häkkinen A, Kandhavelu M, Yli-Harja O, Fonseca JM, Ribeiro AS. Martins L, et al. Among authors: makela j. J Theor Biol. 2012 May 21;301:83-94. doi: 10.1016/j.jtbi.2012.02.015. Epub 2012 Feb 20. J Theor Biol. 2012. PMID: 22370562

7

Effects of codon sequence on the dynamics of genetic networks.

Potapov I, Mäkelä J, Yli-Harja O, Ribeiro AS. Potapov I, et al. Among authors: makela j. J Theor Biol. 2012 Dec 21;315:17-25. doi: 10.1016/j.jtbi.2012.08.029. Epub 2012 Aug 31. J Theor Biol. 2012. PMID: 22960571

8

Mytoe: automatic analysis of mitochondrial dynamics.

Lihavainen E, Mäkelä J, Spelbrink JN, Ribeiro AS. Lihavainen E, et al. Among authors: makela j. Bioinformatics. 2012 Apr 1;28(7):1050-1. doi: 10.1093/bioinformatics/bts073. Epub 2012 Feb 9. Bioinformatics. 2012. PMID: 22321700

9

Nonrandom segregation of sister chromosomes by Escherichia coli MukBEF.

Mäkelä J, Uphoff S, Sherratt DJ. Mäkelä J, et al. Proc Natl Acad Sci U S A. 2021 Aug 17;118(33):e2022078118. doi: 10.1073/pnas.2022078118. Proc Natl Acad Sci U S A. 2021. PMID: 34385314 Free PMC article.

10

ESTOOLS Data@Hand: human stem cell gene expression resource.

Kong L, Aho KL, Granberg K, Lund R, Järvenpää L, Seppälä J, Gokhale P, Leinonen K, Hahne L, Mäkelä J, Laurila K, Pukkila H, Närvä E, Yli-Harja O, Andrews PW, Nykter M, Lahesmaa R, Roos C, Autio R. Kong L, et al. Among authors: makela j. Nat Methods. 2013 Sep;10(9):814-5. doi: 10.1038/nmeth.2576. Nat Methods. 2013. PMID: 23985726 No abstract available.

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