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Chromosome evolution and the genetic basis of agronomically important traits in greater yam.
Bredeson JV, Lyons JB, Oniyinde IO, Okereke NR, Kolade O, Nnabue I, Nwadili CO, Hřibová E, Parker M, Nwogha J, Shu S, Carlson J, Kariba R, Muthemba S, Knop K, Barton GJ, Sherwood AV, Lopez-Montes A, Asiedu R, Jamnadass R, Muchugi A, Goodstein D, Egesi CN, Featherston J, Asfaw A, Simpson GG, Doležel J, Hendre PS, Van Deynze A, Kumar PL, Obidiegwu JE, Bhattacharjee R, Rokhsar DS. Bredeson JV, et al. Among authors: lyons jb. Nat Commun. 2022 Apr 14;13(1):2001. doi: 10.1038/s41467-022-29114-w. Nat Commun. 2022. PMID: 35422045 Free PMC article.
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.
King N, Westbrook MJ, Young SL, Kuo A, Abedin M, Chapman J, Fairclough S, Hellsten U, Isogai Y, Letunic I, Marr M, Pincus D, Putnam N, Rokas A, Wright KJ, Zuzow R, Dirks W, Good M, Goodstein D, Lemons D, Li W, Lyons JB, Morris A, Nichols S, Richter DJ, Salamov A, Sequencing JG, Bork P, Lim WA, Manning G, Miller WT, McGinnis W, Shapiro H, Tjian R, Grigoriev IV, Rokhsar D. King N, et al. Among authors: lyons jb. Nature. 2008 Feb 14;451(7180):783-8. doi: 10.1038/nature06617. Nature. 2008. PMID: 18273011 Free PMC article.
CRISPR-Cas9-mediated knockout of CYP79D1 and CYP79D2 in cassava attenuates toxic cyanogen production.
Gomez MA, Berkoff KC, Gill BK, Iavarone AT, Lieberman SE, Ma JM, Schultink A, Karavolias NG, Wyman SK, Chauhan RD, Taylor NJ, Staskawicz BJ, Cho MJ, Rokhsar DS, Lyons JB. Gomez MA, et al. Among authors: lyons jb. Front Plant Sci. 2023 Mar 17;13:1079254. doi: 10.3389/fpls.2022.1079254. eCollection 2022. Front Plant Sci. 2023. PMID: 37007603 Free PMC article.
Current status and impending progress for cassava structural genomics.
Lyons JB, Bredeson JV, Mansfeld BN, Bauchet GJ, Berry J, Boyher A, Mueller LA, Rokhsar DS, Bart RS. Lyons JB, et al. Plant Mol Biol. 2022 Jun;109(3):177-191. doi: 10.1007/s11103-020-01104-w. Epub 2021 Feb 18. Plant Mol Biol. 2022. PMID: 33604743 Free PMC article. Review.
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs.
Bredeson JV, Mudd AB, Medina-Ruiz S, Mitros T, Smith OK, Miller KE, Lyons JB, Batra SS, Park J, Berkoff KC, Plott C, Grimwood J, Schmutz J, Aguirre-Figueroa G, Khokha MK, Lane M, Philipp I, Laslo M, Hanken J, Kerdivel G, Buisine N, Sachs LM, Buchholz DR, Kwon T, Smith-Parker H, Gridi-Papp M, Ryan MJ, Denton RD, Malone JH, Wallingford JB, Straight AF, Heald R, Hockemeyer D, Harland RM, Rokhsar DS. Bredeson JV, et al. Among authors: lyons jb. Nat Commun. 2024 Jan 17;15(1):579. doi: 10.1038/s41467-023-43012-9. Nat Commun. 2024. PMID: 38233380 Free PMC article.
Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity.
Bredeson JV, Lyons JB, Prochnik SE, Wu GA, Ha CM, Edsinger-Gonzales E, Grimwood J, Schmutz J, Rabbi IY, Egesi C, Nauluvula P, Lebot V, Ndunguru J, Mkamilo G, Bart RS, Setter TL, Gleadow RM, Kulakow P, Ferguson ME, Rounsley S, Rokhsar DS. Bredeson JV, et al. Among authors: lyons jb. Nat Biotechnol. 2016 May;34(5):562-70. doi: 10.1038/nbt.3535. Epub 2016 Apr 18. Nat Biotechnol. 2016. PMID: 27088722 Free article.
Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources.
Ferguson ME, Eyles RP, Garcia-Oliveira AL, Kapinga F, Masumba EA, Amuge T, Bredeson JV, Rokhsar DS, Lyons JB, Shah T, Rounsley S, Mkamilo G. Ferguson ME, et al. Among authors: lyons jb. Front Plant Sci. 2023 Nov 3;14:1270963. doi: 10.3389/fpls.2023.1270963. eCollection 2023. Front Plant Sci. 2023. PMID: 38023930 Free PMC article.
122 results