Lundeberg J - Search Results

1

Spatio-temporal analysis of prostate tumors in situ suggests pre-existence of treatment-resistant clones.

Marklund M, Schultz N, Friedrich S, Berglund E, Tarish F, Tanoglidi A, Liu Y, Bergenstråhle L, Erickson A, Helleday T, Lamb AD, Sonnhammer E, Lundeberg J. Marklund M, et al. Among authors: lundeberg j. Nat Commun. 2022 Sep 17;13(1):5475. doi: 10.1038/s41467-022-33069-3. Nat Commun. 2022. PMID: 36115838 Free PMC article.

2

The Chironomus tentans genome sequence and the organization of the Balbiani ring genes.

Kutsenko A, Svensson T, Nystedt B, Lundeberg J, Björk P, Sonnhammer E, Giacomello S, Visa N, Wieslander L. Kutsenko A, et al. Among authors: lundeberg j. BMC Genomics. 2014 Sep 27;15(1):819. doi: 10.1186/1471-2164-15-819. BMC Genomics. 2014. PMID: 25261295 Free PMC article.

3

Massive and parallel expression profiling using microarrayed single-cell sequencing.

Vickovic S, Ståhl PL, Salmén F, Giatrellis S, Westholm JO, Mollbrink A, Navarro JF, Custodio J, Bienko M, Sutton LA, Rosenquist R, Frisén J, Lundeberg J. Vickovic S, et al. Among authors: lundeberg j. Nat Commun. 2016 Oct 14;7:13182. doi: 10.1038/ncomms13182. Nat Commun. 2016. PMID: 27739429 Free PMC article.

4

ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets.

Wong K, Navarro JF, Bergenstråhle L, Ståhl PL, Lundeberg J. Wong K, et al. Among authors: lundeberg j. Bioinformatics. 2018 Jun 1;34(11):1966-1968. doi: 10.1093/bioinformatics/bty030. Bioinformatics. 2018. PMID: 29360929

5

Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity.

Berglund E, Maaskola J, Schultz N, Friedrich S, Marklund M, Bergenstråhle J, Tarish F, Tanoglidi A, Vickovic S, Larsson L, Salmén F, Ogris C, Wallenborg K, Lagergren J, Ståhl P, Sonnhammer E, Helleday T, Lundeberg J. Berglund E, et al. Among authors: lundeberg j. Nat Commun. 2018 Jun 20;9(1):2419. doi: 10.1038/s41467-018-04724-5. Nat Commun. 2018. PMID: 29925878 Free PMC article.

6

High-definition spatial transcriptomics for in situ tissue profiling.

Vickovic S, Eraslan G, Salmén F, Klughammer J, Stenbeck L, Schapiro D, Äijö T, Bonneau R, Bergenstråhle L, Navarro JF, Gould J, Griffin GK, Borg Å, Ronaghi M, Frisén J, Lundeberg J, Regev A, Ståhl PL. Vickovic S, et al. Among authors: lundeberg j. Nat Methods. 2019 Oct;16(10):987-990. doi: 10.1038/s41592-019-0548-y. Epub 2019 Sep 9. Nat Methods. 2019. PMID: 31501547 Free PMC article.

7

Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues.

Berglund E, Saarenpää S, Jemt A, Gruselius J, Larsson L, Bergenstråhle L, Lundeberg J, Giacomello S. Berglund E, et al. Among authors: lundeberg j. BMC Genomics. 2020 Apr 15;21(1):298. doi: 10.1186/s12864-020-6631-z. BMC Genomics. 2020. PMID: 32293264 Free PMC article.

8

SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation.

Bergenstråhle J, Bergenstråhle L, Lundeberg J. Bergenstråhle J, et al. Among authors: lundeberg j. BMC Bioinformatics. 2020 Apr 29;21(1):161. doi: 10.1186/s12859-020-3489-7. BMC Bioinformatics. 2020. PMID: 32349652 Free PMC article.

9

Integrating spatial gene expression and breast tumour morphology via deep learning.

He B, Bergenstråhle L, Stenbeck L, Abid A, Andersson A, Borg Å, Maaskola J, Lundeberg J, Zou J. He B, et al. Among authors: lundeberg j. Nat Biomed Eng. 2020 Aug;4(8):827-834. doi: 10.1038/s41551-020-0578-x. Epub 2020 Jun 22. Nat Biomed Eng. 2020. PMID: 32572199

10

Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography.

Andersson A, Bergenstråhle J, Asp M, Bergenstråhle L, Jurek A, Fernández Navarro J, Lundeberg J. Andersson A, et al. Among authors: lundeberg j. Commun Biol. 2020 Oct 9;3(1):565. doi: 10.1038/s42003-020-01247-y. Commun Biol. 2020. PMID: 33037292 Free PMC article.

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