Lun ATL - Search Results

1

Detection and removal of barcode swapping in single-cell RNA-seq data.

Griffiths JA, Richard AC, Bach K, Lun ATL, Marioni JC. Griffiths JA, et al. Among authors: lun atl. Nat Commun. 2018 Jul 10;9(1):2667. doi: 10.1038/s41467-018-05083-x. Nat Commun. 2018. PMID: 29991676 Free PMC article.

2

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

Lun AT, Bach K, Marioni JC. Lun AT, et al. Genome Biol. 2016 Apr 27;17:75. doi: 10.1186/s13059-016-0947-7. Genome Biol. 2016. PMID: 27122128 Free PMC article.

3

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors.

Haghverdi L, Lun ATL, Morgan MD, Marioni JC. Haghverdi L, et al. Among authors: lun atl. Nat Biotechnol. 2018 Jun;36(5):421-427. doi: 10.1038/nbt.4091. Epub 2018 Apr 2. Nat Biotechnol. 2018. PMID: 29608177 Free PMC article.

4

T cell cytolytic capacity is independent of initial stimulation strength.

Richard AC, Lun ATL, Lau WWY, Göttgens B, Marioni JC, Griffiths GM. Richard AC, et al. Among authors: lun atl. Nat Immunol. 2018 Aug;19(8):849-858. doi: 10.1038/s41590-018-0160-9. Epub 2018 Jul 16. Nat Immunol. 2018. PMID: 30013148 Free PMC article.

5

COMRADES determines in vivo RNA structures and interactions.

Ziv O, Gabryelska MM, Lun ATL, Gebert LFR, Sheu-Gruttadauria J, Meredith LW, Liu ZY, Kwok CK, Qin CF, MacRae IJ, Goodfellow I, Marioni JC, Kudla G, Miska EA. Ziv O, et al. Among authors: lun atl. Nat Methods. 2018 Oct;15(10):785-788. doi: 10.1038/s41592-018-0121-0. Epub 2018 Sep 10. Nat Methods. 2018. PMID: 30202058 Free PMC article.

6

A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division.

Stojic L, Lun ATL, Mascalchi P, Ernst C, Redmond AM, Mangei J, Barr AR, Bousgouni V, Bakal C, Marioni JC, Odom DT, Gergely F. Stojic L, et al. Among authors: lun atl. Nat Commun. 2020 Apr 15;11(1):1851. doi: 10.1038/s41467-020-14978-7. Nat Commun. 2020. PMID: 32296040 Free PMC article.

7

Locus-specific expression of transposable elements in single cells with CELLO-seq.

Berrens RV, Yang A, Laumer CE, Lun ATL, Bieberich F, Law CT, Lan G, Imaz M, Bowness JS, Brockdorff N, Gaffney DJ, Marioni JC. Berrens RV, et al. Among authors: lun atl. Nat Biotechnol. 2022 Apr;40(4):546-554. doi: 10.1038/s41587-021-01093-1. Epub 2021 Nov 15. Nat Biotechnol. 2022. PMID: 34782740 Free PMC article.

8

beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.

Lun ATL, Pagès H, Smith ML. Lun ATL, et al. PLoS Comput Biol. 2018 May 3;14(5):e1006135. doi: 10.1371/journal.pcbi.1006135. eCollection 2018 May. PLoS Comput Biol. 2018. PMID: 29723188 Free PMC article.

9

Genome-wide analysis reveals no evidence of trans chromosomal regulation of mammalian immune development.

Johanson TM, Coughlan HD, Lun ATL, Bediaga NG, Naselli G, Garnham AL, Harrison LC, Smyth GK, Allan RS. Johanson TM, et al. Among authors: lun atl. PLoS Genet. 2018 Jun 8;14(6):e1007431. doi: 10.1371/journal.pgen.1007431. eCollection 2018 Jun. PLoS Genet. 2018. PMID: 29883495 Free PMC article.

10

Senescence-induced endothelial phenotypes underpin immune-mediated senescence surveillance.

Yin K, Patten D, Gough S, de Barros Gonçalves S, Chan A, Olan I, Cassidy L, Poblocka M, Zhu H, Lun A, Schuijs M, Young A, Martinez-Jimenez C, Halim TYF, Shetty S, Narita M, Hoare M. Yin K, et al. Genes Dev. 2022 May 1;36(9-10):533-549. doi: 10.1101/gad.349585.122. Epub 2022 May 26. Genes Dev. 2022. PMID: 35618311 Free PMC article.

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