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gsufsort: constructing suffix arrays, LCP arrays and BWTs for string collections.
Algorithms Mol Biol. 2020 Sep 22;15:18. doi: 10.1186/s13015-020-00177-y. eCollection 2020.
Algorithms Mol Biol. 2020.
PMID: 32973918
Free PMC article.
External memory BWT and LCP computation for sequence collections with applications.
Egidi L, Louza FA, Manzini G, Telles GP.
Egidi L, et al. Among authors: louza fa.
Algorithms Mol Biol. 2019 Mar 8;14:6. doi: 10.1186/s13015-019-0140-0. eCollection 2019.
Algorithms Mol Biol. 2019.
PMID: 30899322
Free PMC article.
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Generalized enhanced suffix array construction in external memory.
Louza FA, Telles GP, Hoffmann S, Ciferri CDA.
Louza FA, et al.
Algorithms Mol Biol. 2017 Dec 7;12:26. doi: 10.1186/s13015-017-0117-9. eCollection 2017.
Algorithms Mol Biol. 2017.
PMID: 29234460
Free PMC article.
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Metagenomic analysis through the extended Burrows-Wheeler transform.
Guerrini V, Louza FA, Rosone G.
Guerrini V, et al. Among authors: louza fa.
BMC Bioinformatics. 2020 Sep 16;21(Suppl 8):299. doi: 10.1186/s12859-020-03628-w.
BMC Bioinformatics. 2020.
PMID: 32938362
Free PMC article.
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