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Modified RNAs and predictions with the ViennaRNA Package.
Varenyk Y, Spicher T, Hofacker IL, Lorenz R. Varenyk Y, et al. Among authors: lorenz r. Bioinformatics. 2023 Nov 1;39(11):btad696. doi: 10.1093/bioinformatics/btad696. Bioinformatics. 2023. PMID: 37971965 Free PMC article.
Folding RNA/DNA hybrid duplexes.
Lorenz R, Hofacker IL, Bernhart SH. Lorenz R, et al. Bioinformatics. 2012 Oct 1;28(19):2530-1. doi: 10.1093/bioinformatics/bts466. Epub 2012 Jul 24. Bioinformatics. 2012. PMID: 22829626
SHAPE directed RNA folding.
Lorenz R, Luntzer D, Hofacker IL, Stadler PF, Wolfinger MT. Lorenz R, et al. Bioinformatics. 2016 Jan 1;32(1):145-7. doi: 10.1093/bioinformatics/btv523. Epub 2015 Sep 9. Bioinformatics. 2016. PMID: 26353838 Free PMC article.
ViennaRNA Package 2.0.
Lorenz R, Bernhart SH, Höner Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, Hofacker IL. Lorenz R, et al. Algorithms Mol Biol. 2011 Nov 24;6:26. doi: 10.1186/1748-7188-6-26. Algorithms Mol Biol. 2011. PMID: 22115189 Free PMC article.
Predicting RNA structure: advances and limitations.
Hofacker IL, Lorenz R. Hofacker IL, et al. Among authors: lorenz r. Methods Mol Biol. 2014;1086:1-19. doi: 10.1007/978-1-62703-667-2_1. Methods Mol Biol. 2014. PMID: 24136595
RNA folding with hard and soft constraints.
Lorenz R, Hofacker IL, Stadler PF. Lorenz R, et al. Algorithms Mol Biol. 2016 Apr 23;11:8. doi: 10.1186/s13015-016-0070-z. eCollection 2016. Algorithms Mol Biol. 2016. PMID: 27110276 Free PMC article.
1,183 results