Lopez-Bigas N - Search Results

1

DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.

Bonet J, Chen M, Dabad M, Heath S, Gonzalez-Perez A, Lopez-Bigas N, Lagergren J. Bonet J, et al. Bioinformatics. 2022 Feb 7;38(5):1235-1243. doi: 10.1093/bioinformatics/btab745. Bioinformatics. 2022. PMID: 34718417 Free PMC article.

2

Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel.

González-Pérez A, López-Bigas N. González-Pérez A, et al. Am J Hum Genet. 2011 Apr 8;88(4):440-9. doi: 10.1016/j.ajhg.2011.03.004. Epub 2011 Mar 31. Am J Hum Genet. 2011. PMID: 21457909 Free PMC article.

3

SVGMap: configurable image browser for experimental data.

Rafael-Palou X, Schroeder MP, Lopez-Bigas N. Rafael-Palou X, et al. Bioinformatics. 2012 Jan 1;28(1):119-20. doi: 10.1093/bioinformatics/btr581. Epub 2011 Oct 27. Bioinformatics. 2012. PMID: 22034520

4

Nucleotide excision repair is impaired by binding of transcription factors to DNA.

Sabarinathan R, Mularoni L, Deu-Pons J, Gonzalez-Perez A, López-Bigas N. Sabarinathan R, et al. Nature. 2016 Apr 14;532(7598):264-7. doi: 10.1038/nature17661. Nature. 2016. PMID: 27075101

5

Altered oncomodules underlie chromatin regulatory factors driver mutations.

Frigola J, Iturbide A, Lopez-Bigas N, Peiro S, Gonzalez-Perez A. Frigola J, et al. Oncotarget. 2016 May 24;7(21):30748-59. doi: 10.18632/oncotarget.8752. Oncotarget. 2016. PMID: 27095575 Free PMC article.

6

OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations.

Mularoni L, Sabarinathan R, Deu-Pons J, Gonzalez-Perez A, López-Bigas N. Mularoni L, et al. Genome Biol. 2016 Jun 16;17(1):128. doi: 10.1186/s13059-016-0994-0. Genome Biol. 2016. PMID: 27311963 Free PMC article.

7

Rational design of cancer gene panels with OncoPaD.

Rubio-Perez C, Deu-Pons J, Tamborero D, Lopez-Bigas N, Gonzalez-Perez A. Rubio-Perez C, et al. Genome Med. 2016 Oct 3;8(1):98. doi: 10.1186/s13073-016-0349-1. Genome Med. 2016. PMID: 27716338 Free PMC article.

8

Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations.

Tamborero D, Rubio-Perez C, Deu-Pons J, Schroeder MP, Vivancos A, Rovira A, Tusquets I, Albanell J, Rodon J, Tabernero J, de Torres C, Dienstmann R, Gonzalez-Perez A, Lopez-Bigas N. Tamborero D, et al. Genome Med. 2018 Mar 28;10(1):25. doi: 10.1186/s13073-018-0531-8. Genome Med. 2018. PMID: 29592813 Free PMC article.

9

Comprehensive Characterization of Cancer Driver Genes and Mutations.

Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Ng PK, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network; Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L. Bailey MH, et al. Cell. 2018 Apr 5;173(2):371-385.e18. doi: 10.1016/j.cell.2018.02.060. Cell. 2018. PMID: 29625053 Free PMC article.

10

A Pan-cancer Landscape of Interactions between Solid Tumors and Infiltrating Immune Cell Populations.

Tamborero D, Rubio-Perez C, Muiños F, Sabarinathan R, Piulats JM, Muntasell A, Dienstmann R, Lopez-Bigas N, Gonzalez-Perez A. Tamborero D, et al. Clin Cancer Res. 2018 Aug 1;24(15):3717-3728. doi: 10.1158/1078-0432.CCR-17-3509. Epub 2018 Apr 17. Clin Cancer Res. 2018. PMID: 29666300

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