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A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. "Hillquist").
Brůna T, Aryal R, Dudchenko O, Sargent DJ, Mead D, Buti M, Cavallini A, Hytönen T, Andrés J, Pham M, Weisz D, Mascagni F, Usai G, Natali L, Bassil N, Fernandez GE, Lomsadze A, Armour M, Olukolu B, Poorten T, Britton C, Davik J, Ashrafi H, Aiden EL, Borodovsky M, Worthington M. Brůna T, et al. Among authors: lomsadze a. G3 (Bethesda). 2023 Feb 9;13(2):jkac289. doi: 10.1093/g3journal/jkac289. G3 (Bethesda). 2023. PMID: 36331334 Free PMC article.
Improving gene annotation of complete viral genomes.
Mills R, Rozanov M, Lomsadze A, Tatusova T, Borodovsky M. Mills R, et al. Among authors: lomsadze a. Nucleic Acids Res. 2003 Dec 1;31(23):7041-55. doi: 10.1093/nar/gkg878. Nucleic Acids Res. 2003. PMID: 14627837 Free PMC article.
Frameshift detection in prokaryotic genomic sequences.
Kislyuk A, Lomsadze A, Lapidus AL, Borodovsky M. Kislyuk A, et al. Among authors: lomsadze a. Int J Bioinform Res Appl. 2009;5(4):458-77. doi: 10.1504/IJBRA.2009.027519. Int J Bioinform Res Appl. 2009. PMID: 19640832
Ab initio gene identification in metagenomic sequences.
Zhu W, Lomsadze A, Borodovsky M. Zhu W, et al. Among authors: lomsadze a. Nucleic Acids Res. 2010 Jul;38(12):e132. doi: 10.1093/nar/gkq275. Epub 2010 Apr 19. Nucleic Acids Res. 2010. PMID: 20403810 Free PMC article.
Identification of protein coding regions in RNA transcripts.
Tang S, Lomsadze A, Borodovsky M. Tang S, et al. Among authors: lomsadze a. Nucleic Acids Res. 2015 Jul 13;43(12):e78. doi: 10.1093/nar/gkv227. Epub 2015 Apr 13. Nucleic Acids Res. 2015. PMID: 25870408 Free PMC article.
NCBI prokaryotic genome annotation pipeline.
Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J. Tatusova T, et al. Among authors: lomsadze a. Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24. Nucleic Acids Res. 2016. PMID: 27342282 Free PMC article.
37 results