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Cell2location maps fine-grained cell types in spatial transcriptomics.
Kleshchevnikov V, Shmatko A, Dann E, Aivazidis A, King HW, Li T, Elmentaite R, Lomakin A, Kedlian V, Gayoso A, Jain MS, Park JS, Ramona L, Tuck E, Arutyunyan A, Vento-Tormo R, Gerstung M, James L, Stegle O, Bayraktar OA. Kleshchevnikov V, et al. Among authors: lomakin a. Nat Biotechnol. 2022 May;40(5):661-671. doi: 10.1038/s41587-021-01139-4. Epub 2022 Jan 13. Nat Biotechnol. 2022. PMID: 35027729
Spatial genomics maps the structure, nature and evolution of cancer clones.
Lomakin A, Svedlund J, Strell C, Gataric M, Shmatko A, Rukhovich G, Park JS, Ju YS, Dentro S, Kleshchevnikov V, Vaskivskyi V, Li T, Bayraktar OA, Pinder S, Richardson AL, Santagata S, Campbell PJ, Russnes H, Gerstung M, Nilsson M, Yates LR. Lomakin A, et al. Nature. 2022 Nov;611(7936):594-602. doi: 10.1038/s41586-022-05425-2. Epub 2022 Nov 9. Nature. 2022. PMID: 36352222 Free PMC article.
Spatial biology of cancer evolution.
Seferbekova Z, Lomakin A, Yates LR, Gerstung M. Seferbekova Z, et al. Among authors: lomakin a. Nat Rev Genet. 2023 May;24(5):295-313. doi: 10.1038/s41576-022-00553-x. Epub 2022 Dec 9. Nat Rev Genet. 2023. PMID: 36494509 Review.
Nuclear fragility, blaming the blebs.
Srivastava N, Nader GPF, Williart A, Rollin R, Cuvelier D, Lomakin A, Piel M. Srivastava N, et al. Among authors: lomakin a. Curr Opin Cell Biol. 2021 Jun;70:100-108. doi: 10.1016/j.ceb.2021.01.007. Epub 2021 Mar 1. Curr Opin Cell Biol. 2021. PMID: 33662810 Review.
RhoG deficiency abrogates cytotoxicity of human lymphocytes and causes hemophagocytic lymphohistiocytosis.
Kalinichenko A, Perinetti Casoni G, Dupré L, Trotta L, Huemer J, Galgano D, German Y, Haladik B, Pazmandi J, Thian M, Yüce Petronczki Ö, Chiang SC, Taskinen M, Hekkala A, Kauppila S, Lindgren O, Tapiainen T, Kraakman MJ, Vettenranta K, Lomakin AJ, Saarela J, Seppänen MRJ, Bryceson YT, Boztug K. Kalinichenko A, et al. Among authors: lomakin aj. Blood. 2021 Apr 15;137(15):2033-2045. doi: 10.1182/blood.2020008738. Blood. 2021. PMID: 33513601 Free PMC article.
The nucleus acts as a ruler tailoring cell responses to spatial constraints.
Lomakin AJ, Cattin CJ, Cuvelier D, Alraies Z, Molina M, Nader GPF, Srivastava N, Sáez PJ, Garcia-Arcos JM, Zhitnyak IY, Bhargava A, Driscoll MK, Welf ES, Fiolka R, Petrie RJ, De Silva NS, González-Granado JM, Manel N, Lennon-Duménil AM, Müller DJ, Piel M. Lomakin AJ, et al. Science. 2020 Oct 16;370(6514):eaba2894. doi: 10.1126/science.aba2894. Science. 2020. PMID: 33060332 Free PMC article.
127 results