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Table representation of search results timeline featuring number of search results per year.
Year | Number of Results |
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2017 | 1 |
2019 | 2 |
2020 | 2 |
2022 | 1 |
2024 | 1 |
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DNABERT-S: LEARNING SPECIES-AWARE DNA EMBEDDING WITH GENOME FOUNDATION MODELS.
ArXiv [Preprint]. 2024 Feb 15:arXiv:2402.08777v2.
ArXiv. 2024.
PMID: 38410647
Free PMC article.
Preprint.
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC.
Meyer F, et al. Among authors: shi l.
Nat Methods. 2022 Apr;19(4):429-440. doi: 10.1038/s41592-022-01431-4. Epub 2022 Apr 8.
Nat Methods. 2022.
PMID: 35396482
Free PMC article.
Item in Clipboard
Transcriptome analysis of Actinoplanes utahensis reveals molecular signature of saccharide impact on acarbose biosynthesis.
Weng CY, Shi LZ, Wang YJ, Zheng YG.
Weng CY, et al.
3 Biotech. 2020 Nov;10(11):473. doi: 10.1007/s13205-020-02466-0. Epub 2020 Oct 12.
3 Biotech. 2020.
PMID: 33088668
Free PMC article.
Item in Clipboard
Deconvolute individual genomes from metagenome sequences through short read clustering.
Li K, Lu Y, Deng L, Wang L, Shi L, Wang Z.
Li K, et al. Among authors: shi l.
PeerJ. 2020 Apr 8;8:e8966. doi: 10.7717/peerj.8966. eCollection 2020.
PeerJ. 2020.
PMID: 32296615
Free PMC article.
Item in Clipboard
Computational Strategies for Scalable Genomics Analysis.
Shi L, Wang Z.
Shi L, et al.
Genes (Basel). 2019 Dec 6;10(12):1017. doi: 10.3390/genes10121017.
Genes (Basel). 2019.
PMID: 31817630
Free PMC article.
Item in Clipboard
SpaRC: scalable sequence clustering using Apache Spark.
Shi L, Meng X, Tseng E, Mascagni M, Wang Z.
Shi L, et al.
Bioinformatics. 2019 Mar 1;35(5):760-768. doi: 10.1093/bioinformatics/bty733.
Bioinformatics. 2019.
PMID: 30816928
Item in Clipboard
Construction and Optimization of a Large Gene Coexpression Network in Maize Using RNA-Seq Data.
Huang J, Vendramin S, Shi L, McGinnis KM.
Huang J, et al. Among authors: shi l.
Plant Physiol. 2017 Sep;175(1):568-583. doi: 10.1104/pp.17.00825. Epub 2017 Aug 2.
Plant Physiol. 2017.
PMID: 28768814
Free PMC article.
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