Liu YY - Search Results

1

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics.

Li L, Wang T, Ning Z, Zhang X, Butcher J, Serrana JM, Simopoulos CMA, Mayne J, Stintzi A, Mack DR, Liu YY, Figeys D. Li L, et al. Among authors: liu yy. Nat Commun. 2023 Jun 10;14(1):3428. doi: 10.1038/s41467-023-39149-2. Nat Commun. 2023. PMID: 37301875 Free PMC article.

2

Universality of human microbial dynamics.

Bashan A, Gibson TE, Friedman J, Carey VJ, Weiss ST, Hohmann EL, Liu YY. Bashan A, et al. Among authors: liu yy. Nature. 2016 Jun 9;534(7606):259-62. doi: 10.1038/nature18301. Nature. 2016. PMID: 27279224 Free PMC article.

3

Mapping the ecological networks of microbial communities.

Xiao Y, Angulo MT, Friedman J, Waldor MK, Weiss ST, Liu YY. Xiao Y, et al. Among authors: liu yy. Nat Commun. 2017 Dec 11;8(1):2042. doi: 10.1038/s41467-017-02090-2. Nat Commun. 2017. PMID: 29229902 Free PMC article.

4

A theoretical framework for controlling complex microbial communities.

Angulo MT, Moog CH, Liu YY. Angulo MT, et al. Among authors: liu yy. Nat Commun. 2019 Mar 5;10(1):1045. doi: 10.1038/s41467-019-08890-y. Nat Commun. 2019. PMID: 30837457 Free PMC article.

5

An ecological framework to understand the efficacy of fecal microbiota transplantation.

Xiao Y, Angulo MT, Lao S, Weiss ST, Liu YY. Xiao Y, et al. Among authors: liu yy. Nat Commun. 2020 Jul 3;11(1):3329. doi: 10.1038/s41467-020-17180-x. Nat Commun. 2020. PMID: 32620839 Free PMC article.

6

Deciphering functional redundancy in the human microbiome.

Tian L, Wang XW, Wu AK, Fan Y, Friedman J, Dahlin A, Waldor MK, Weinstock GM, Weiss ST, Liu YY. Tian L, et al. Among authors: liu yy. Nat Commun. 2020 Dec 4;11(1):6217. doi: 10.1038/s41467-020-19940-1. Nat Commun. 2020. PMID: 33277504 Free PMC article.

7

Rejuvenating the human gut microbiome.

Ke S, Weiss ST, Liu YY. Ke S, et al. Among authors: liu yy. Trends Mol Med. 2022 Aug;28(8):619-630. doi: 10.1016/j.molmed.2022.05.005. Epub 2022 Jun 30. Trends Mol Med. 2022. PMID: 35781423 Free PMC article. Review.

8

Dissecting the role of the human microbiome in COVID-19 via metagenome-assembled genomes.

Ke S, Weiss ST, Liu YY. Ke S, et al. Among authors: liu yy. Nat Commun. 2022 Sep 6;13(1):5235. doi: 10.1038/s41467-022-32991-w. Nat Commun. 2022. PMID: 36068270 Free PMC article.

9

Searching for spin glass ground states through deep reinforcement learning.

Fan C, Shen M, Nussinov Z, Liu Z, Sun Y, Liu YY. Fan C, et al. Among authors: liu yy, liu z. Nat Commun. 2023 Feb 9;14(1):725. doi: 10.1038/s41467-023-36363-w. Nat Commun. 2023. PMID: 36759516 Free PMC article.

10

Controlling the human microbiome.

Liu YY. Liu YY. Cell Syst. 2023 Feb 15;14(2):135-159. doi: 10.1016/j.cels.2022.12.010. Cell Syst. 2023. PMID: 36796332 Free PMC article. Review.

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