Liu XS - Search Results

1

Discovery of Targets for Immune-Metabolic Antitumor Drugs Identifies Estrogen-Related Receptor Alpha.

Sahu A, Wang X, Munson P, Klomp JPG, Wang X, Gu SS, Han Y, Qian G, Nicol P, Zeng Z, Wang C, Tokheim C, Zhang W, Fu J, Wang J, Nair NU, Rens JAP, Bourajjaj M, Jansen B, Leenders I, Lemmers J, Musters M, van Zanten S, van Zelst L, Worthington J, Liu JS, Juric D, Meyer CA, Oubrie A, Liu XS, Fisher DE, Flaherty KT. Sahu A, et al. Among authors: liu js, liu xs. Cancer Discov. 2023 Mar 1;13(3):672-701. doi: 10.1158/2159-8290.CD-22-0244. Cancer Discov. 2023. PMID: 36745048 Free PMC article.

2

Integrating regulatory motif discovery and genome-wide expression analysis.

Conlon EM, Liu XS, Lieb JD, Liu JS. Conlon EM, et al. Among authors: liu js, liu xs. Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3339-44. doi: 10.1073/pnas.0630591100. Epub 2003 Mar 7. Proc Natl Acad Sci U S A. 2003. PMID: 12626739 Free PMC article.

3

A boosting approach for motif modeling using ChIP-chip data.

Hong P, Liu XS, Zhou Q, Lu X, Liu JS, Wong WH. Hong P, et al. Among authors: liu js, liu xs. Bioinformatics. 2005 Jun 1;21(11):2636-43. doi: 10.1093/bioinformatics/bti402. Epub 2005 Apr 7. Bioinformatics. 2005. PMID: 15817698

4

A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.

Li W, Meyer CA, Liu XS. Li W, et al. Among authors: liu xs. Bioinformatics. 2005 Jun;21 Suppl 1:i274-82. doi: 10.1093/bioinformatics/bti1046. Bioinformatics. 2005. PMID: 15961467

5

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1.

Carroll JS, Liu XS, Brodsky AS, Li W, Meyer CA, Szary AJ, Eeckhoute J, Shao W, Hestermann EV, Geistlinger TR, Fox EA, Silver PA, Brown M. Carroll JS, et al. Among authors: liu xs. Cell. 2005 Jul 15;122(1):33-43. doi: 10.1016/j.cell.2005.05.008. Cell. 2005. PMID: 16009131 Free article.

6

Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription.

Swinburne IA, Meyer CA, Liu XS, Silver PA, Brodsky AS. Swinburne IA, et al. Among authors: liu xs. Genome Res. 2006 Jul;16(7):912-21. doi: 10.1101/gr.5211806. Epub 2006 Jun 12. Genome Res. 2006. PMID: 16769980 Free PMC article.

7

Model-based analysis of tiling-arrays for ChIP-chip.

Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. Johnson WE, et al. Among authors: liu xs. Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12457-62. doi: 10.1073/pnas.0601180103. Epub 2006 Aug 8. Proc Natl Acad Sci U S A. 2006. PMID: 16895995 Free PMC article.

8

Genome-wide analysis of estrogen receptor binding sites.

Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, Brodsky AS, Keeton EK, Fertuck KC, Hall GF, Wang Q, Bekiranov S, Sementchenko V, Fox EA, Silver PA, Gingeras TR, Liu XS, Brown M. Carroll JS, et al. Among authors: liu xs. Nat Genet. 2006 Nov;38(11):1289-97. doi: 10.1038/ng1901. Epub 2006 Oct 1. Nat Genet. 2006. PMID: 17013392

9

High-throughput mapping of the chromatin structure of human promoters.

Ozsolak F, Song JS, Liu XS, Fisher DE. Ozsolak F, et al. Among authors: liu xs. Nat Biotechnol. 2007 Feb;25(2):244-8. doi: 10.1038/nbt1279. Epub 2007 Jan 14. Nat Biotechnol. 2007. PMID: 17220878

10

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Lupien M, Eeckhoute J, Meyer CA, Wang Q, Zhang Y, Li W, Carroll JS, Liu XS, Brown M. Lupien M, et al. Among authors: liu xs. Cell. 2008 Mar 21;132(6):958-70. doi: 10.1016/j.cell.2008.01.018. Cell. 2008. PMID: 18358809 Free PMC article.

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