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High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut.
Agarwal G, Clevenger J, Pandey MK, Wang H, Shasidhar Y, Chu Y, Fountain JC, Choudhary D, Culbreath AK, Liu X, Huang G, Wang X, Deshmukh R, Holbrook CC, Bertioli DJ, Ozias-Akins P, Jackson SA, Varshney RK, Guo B. Agarwal G, et al. Among authors: liu x. Plant Biotechnol J. 2018 Nov;16(11):1954-1967. doi: 10.1111/pbi.12930. Epub 2018 May 15. Plant Biotechnol J. 2018. PMID: 29637729 Free PMC article.
The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line.
Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, Liu X, Chen W, Xie M, Wang W, Hammond S, Andersen MR, Neff N, Passarelli B, Koh W, Fan HC, Wang J, Gui Y, Lee KH, Betenbaugh MJ, Quake SR, Famili I, Palsson BO, Wang J. Xu X, et al. Among authors: liu x. Nat Biotechnol. 2011 Jul 31;29(8):735-41. doi: 10.1038/nbt.1932. Nat Biotechnol. 2011. PMID: 21804562 Free PMC article.
Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
Qi X, Li MW, Xie M, Liu X, Ni M, Shao G, Song C, Kay-Yuen Yim A, Tao Y, Wong FL, Isobe S, Wong CF, Wong KS, Xu C, Li C, Wang Y, Guan R, Sun F, Fan G, Xiao Z, Zhou F, Phang TH, Liu X, Tong SW, Chan TF, Yiu SM, Tabata S, Wang J, Xu X, Lam HM. Qi X, et al. Among authors: liu x. Nat Commun. 2014 Jul 9;5:4340. doi: 10.1038/ncomms5340. Nat Commun. 2014. PMID: 25004933 Free PMC article.
Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution.
Li F, Fan G, Lu C, Xiao G, Zou C, Kohel RJ, Ma Z, Shang H, Ma X, Wu J, Liang X, Huang G, Percy RG, Liu K, Yang W, Chen W, Du X, Shi C, Yuan Y, Ye W, Liu X, Zhang X, Liu W, Wei H, Wei S, Huang G, Zhang X, Zhu S, Zhang H, Sun F, Wang X, Liang J, Wang J, He Q, Huang L, Wang J, Cui J, Song G, Wang K, Xu X, Yu JZ, Zhu Y, Yu S. Li F, et al. Among authors: liu k, liu x, liu w. Nat Biotechnol. 2015 May;33(5):524-30. doi: 10.1038/nbt.3208. Epub 2015 Apr 20. Nat Biotechnol. 2015. PMID: 25893780
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.
Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Kim KD, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jackson SA, Michelmore R, Ozias-Akins P. Bertioli DJ, et al. Among authors: liu x. Nat Genet. 2016 Apr;48(4):438-46. doi: 10.1038/ng.3517. Epub 2016 Feb 22. Nat Genet. 2016. PMID: 26901068 Free article.
Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.).
Thudi M, Chitikineni A, Liu X, He W, Roorkiwal M, Yang W, Jian J, Doddamani D, Gaur PM, Rathore A, Samineni S, Saxena RK, Xu D, Singh NP, Chaturvedi SK, Zhang G, Wang J, Datta SK, Xu X, Varshney RK. Thudi M, et al. Among authors: liu x. Sci Rep. 2016 Dec 16;6:38636. doi: 10.1038/srep38636. Sci Rep. 2016. PMID: 27982107 Free PMC article.
The high-quality genome of Brassica napus cultivar 'ZS11' reveals the introgression history in semi-winter morphotype.
Sun F, Fan G, Hu Q, Zhou Y, Guan M, Tong C, Li J, Du D, Qi C, Jiang L, Liu W, Huang S, Chen W, Yu J, Mei D, Meng J, Zeng P, Shi J, Liu K, Wang X, Wang X, Long Y, Liang X, Hu Z, Huang G, Dong C, Zhang H, Li J, Zhang Y, Li L, Shi C, Wang J, Lee SM, Guan C, Xu X, Liu S, Liu X, Chalhoub B, Hua W, Wang H. Sun F, et al. Among authors: liu k, liu x, liu s, liu w. Plant J. 2017 Nov;92(3):452-468. doi: 10.1111/tpj.13669. Epub 2017 Oct 9. Plant J. 2017. PMID: 28849613 Free article.
Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.
Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X. Varshney RK, et al. Among authors: liu x. Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18. Nat Biotechnol. 2017. PMID: 28922347 Free PMC article.
A western Sahara centre of domestication inferred from pearl millet genomes.
Burgarella C, Cubry P, Kane NA, Varshney RK, Mariac C, Liu X, Shi C, Thudi M, Couderc M, Xu X, Chitikineni A, Scarcelli N, Barnaud A, Rhoné B, Dupuy C, François O, Berthouly-Salazar C, Vigouroux Y. Burgarella C, et al. Among authors: liu x. Nat Ecol Evol. 2018 Sep;2(9):1377-1380. doi: 10.1038/s41559-018-0643-y. Epub 2018 Aug 6. Nat Ecol Evol. 2018. PMID: 30082736
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