Liu Q - Search Results

1

Locating transcription factor binding sites by fully convolutional neural network.

Zhang Q, Wang S, Chen Z, He Y, Liu Q, Huang DS. Zhang Q, et al. Among authors: liu q. Brief Bioinform. 2021 Sep 2;22(5):bbaa435. doi: 10.1093/bib/bbaa435. Brief Bioinform. 2021. PMID: 33498086 Free PMC article.

2

A new protein-ligand binding sites prediction method based on the integration of protein sequence conservation information.

Dai T, Liu Q, Gao J, Cao Z, Zhu R. Dai T, et al. Among authors: liu q. BMC Bioinformatics. 2011 Dec 14;12 Suppl 14(Suppl 14):S9. doi: 10.1186/1471-2105-12-S14-S9. BMC Bioinformatics. 2011. PMID: 22373099 Free PMC article.

3

Towards a bioinformatics analysis of anti-Alzheimer's herbal medicines from a target network perspective.

Sun Y, Zhu R, Ye H, Tang K, Zhao J, Chen Y, Liu Q, Cao Z. Sun Y, et al. Among authors: liu q. Brief Bioinform. 2013 May;14(3):327-43. doi: 10.1093/bib/bbs025. Epub 2012 Aug 11. Brief Bioinform. 2013. PMID: 22887889 Review.

4

Towards biological characters of interactions between transcription factors and their DNA targets in mammals.

Zheng G, Liu Q, Ding G, Wei C, Li Y. Zheng G, et al. Among authors: liu q. BMC Genomics. 2012 Aug 13;13:388. doi: 10.1186/1471-2164-13-388. BMC Genomics. 2012. PMID: 22888987 Free PMC article.

5

DeepCRISPR: optimized CRISPR guide RNA design by deep learning.

Chuai G, Ma H, Yan J, Chen M, Hong N, Xue D, Zhou C, Zhu C, Chen K, Duan B, Gu F, Qu S, Huang D, Wei J, Liu Q. Chuai G, et al. Among authors: liu q. Genome Biol. 2018 Jun 26;19(1):80. doi: 10.1186/s13059-018-1459-4. Genome Biol. 2018. PMID: 29945655 Free PMC article.

6

Data imbalance in CRISPR off-target prediction.

Gao Y, Chuai G, Yu W, Qu S, Liu Q. Gao Y, et al. Among authors: liu q. Brief Bioinform. 2020 Jul 15;21(4):1448-1454. doi: 10.1093/bib/bbz069. Brief Bioinform. 2020. PMID: 31267129

7

iDMer: an integrative and mechanism-driven response system for identifying compound interventions for sudden virus outbreak.

Wei Z, Gao Y, Meng F, Chen X, Gong Y, Zhu C, Ju B, Zhang C, Liu Z, Liu Q. Wei Z, et al. Among authors: liu z, liu q. Brief Bioinform. 2021 Mar 22;22(2):976-987. doi: 10.1093/bib/bbaa341. Brief Bioinform. 2021. PMID: 33302292 Free PMC article.

8

iCRISEE: an integrative analysis of CRISPR screen by reducing false positive hits.

Zhang T, Li Y, Yang Y, Weng L, Wu Z, Zhu J, Qin J, Liu Q, Wang P. Zhang T, et al. Among authors: liu q. Brief Bioinform. 2022 Jan 17;23(1):bbab505. doi: 10.1093/bib/bbab505. Brief Bioinform. 2022. PMID: 34905767

9

PRODeepSyn: predicting anticancer synergistic drug combinations by embedding cell lines with protein-protein interaction network.

Wang X, Zhu H, Jiang Y, Li Y, Tang C, Chen X, Li Y, Liu Q, Liu Q. Wang X, et al. Among authors: liu q. Brief Bioinform. 2022 Mar 10;23(2):bbab587. doi: 10.1093/bib/bbab587. Brief Bioinform. 2022. PMID: 35043159 Free PMC article.

10

Base-resolution prediction of transcription factor binding signals by a deep learning framework.

Zhang Q, He Y, Wang S, Chen Z, Guo Z, Cui Z, Liu Q, Huang DS. Zhang Q, et al. Among authors: liu q. PLoS Comput Biol. 2022 Mar 9;18(3):e1009941. doi: 10.1371/journal.pcbi.1009941. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35263332 Free PMC article.

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