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Learning for single-cell assignment.
Duan B, Zhu C, Chuai G, Tang C, Chen X, Chen S, Fu S, Li G, Liu Q. Duan B, et al. Among authors: liu q. Sci Adv. 2020 Oct 30;6(44):eabd0855. doi: 10.1126/sciadv.abd0855. Print 2020 Oct. Sci Adv. 2020. PMID: 33127686 Free PMC article.
Benchmarking CRISPR on-target sgRNA design.
Yan J, Chuai G, Zhou C, Zhu C, Yang J, Zhang C, Gu F, Xu H, Wei J, Liu Q. Yan J, et al. Among authors: liu q. Brief Bioinform. 2018 Jul 20;19(4):721-724. doi: 10.1093/bib/bbx001. Brief Bioinform. 2018. PMID: 28203699
[In silico CRISPR-based sgRNA design].
Wang Y, Chuai G, Yan J, Shi L, Liu Q. Wang Y, et al. Among authors: liu q. Sheng Wu Gong Cheng Xue Bao. 2017 Oct 25;33(10):1744-1756. doi: 10.13345/j.cjb.170182. Sheng Wu Gong Cheng Xue Bao. 2017. PMID: 29082722 Free article. Review. Chinese.
DeepCRISPR: optimized CRISPR guide RNA design by deep learning.
Chuai G, Ma H, Yan J, Chen M, Hong N, Xue D, Zhou C, Zhu C, Chen K, Duan B, Gu F, Qu S, Huang D, Wei J, Liu Q. Chuai G, et al. Among authors: liu q. Genome Biol. 2018 Jun 26;19(1):80. doi: 10.1186/s13059-018-1459-4. Genome Biol. 2018. PMID: 29945655 Free PMC article.
Model-based understanding of single-cell CRISPR screening.
Duan B, Zhou C, Zhu C, Yu Y, Li G, Zhang S, Zhang C, Ye X, Ma H, Qu S, Zhang Z, Wang P, Sun S, Liu Q. Duan B, et al. Among authors: liu q. Nat Commun. 2019 May 20;10(1):2233. doi: 10.1038/s41467-019-10216-x. Nat Commun. 2019. PMID: 31110232 Free PMC article.
Data imbalance in CRISPR off-target prediction.
Gao Y, Chuai G, Yu W, Qu S, Liu Q. Gao Y, et al. Among authors: liu q. Brief Bioinform. 2020 Jul 15;21(4):1448-1454. doi: 10.1093/bib/bbz069. Brief Bioinform. 2020. PMID: 31267129
C3: Consensus Cancer Driver Gene Caller.
Zhu CY, Zhou C, Chen YQ, Shen AZ, Guo ZM, Yang ZY, Ye XY, Qu S, Wei J, Liu Q. Zhu CY, et al. Among authors: liu q. Genomics Proteomics Bioinformatics. 2019 Jun;17(3):311-318. doi: 10.1016/j.gpb.2018.10.004. Epub 2019 Aug 26. Genomics Proteomics Bioinformatics. 2019. PMID: 31465854 Free PMC article.
42,411 results
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