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High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice.
Xiao L, Sonne SB, Feng Q, Chen N, Xia Z, Li X, Fang Z, Zhang D, Fjære E, Midtbø LK, Derrien M, Hugenholtz F, Tang L, Li J, Zhang J, Liu C, Hao Q, Vogel UB, Mortensen A, Kleerebezem M, Licht TR, Yang H, Wang J, Li Y, Arumugam M, Wang J, Madsen L, Kristiansen K. Xiao L, et al. Among authors: liu c. Microbiome. 2017 Apr 8;5(1):43. doi: 10.1186/s40168-017-0258-6. Microbiome. 2017. PMID: 28390422 Free PMC article.
Effect of a long-term high-protein diet on survival, obesity development, and gut microbiota in mice.
Kiilerich P, Myrmel LS, Fjære E, Hao Q, Hugenholtz F, Sonne SB, Derrien M, Pedersen LM, Petersen RK, Mortensen A, Licht TR, Rømer MU, Vogel UB, Waagbø LJ, Giallourou N, Feng Q, Xiao L, Liu C, Liaset B, Kleerebezem M, Wang J, Madsen L, Kristiansen K. Kiilerich P, et al. Among authors: liu c. Am J Physiol Endocrinol Metab. 2016 Jun 1;310(11):E886-99. doi: 10.1152/ajpendo.00363.2015. Epub 2016 Mar 29. Am J Physiol Endocrinol Metab. 2016. PMID: 27026084 Free article.
Two distinct metacommunities characterize the gut microbiota in Crohn's disease patients.
He Q, Gao Y, Jie Z, Yu X, Laursen JM, Xiao L, Li Y, Li L, Zhang F, Feng Q, Li X, Yu J, Liu C, Lan P, Yan T, Liu X, Xu X, Yang H, Wang J, Madsen L, Brix S, Wang J, Kristiansen K, Jia H. He Q, et al. Among authors: liu x, liu c. Gigascience. 2017 Jul 1;6(7):1-11. doi: 10.1093/gigascience/gix050. Gigascience. 2017. PMID: 28655159 Free PMC article.
A catalog of the mouse gut metagenome.
Xiao L, Feng Q, Liang S, Sonne SB, Xia Z, Qiu X, Li X, Long H, Zhang J, Zhang D, Liu C, Fang Z, Chou J, Glanville J, Hao Q, Kotowska D, Colding C, Licht TR, Wu D, Yu J, Sung JJ, Liang Q, Li J, Jia H, Lan Z, Tremaroli V, Dworzynski P, Nielsen HB, Bäckhed F, Doré J, Le Chatelier E, Ehrlich SD, Lin JC, Arumugam M, Wang J, Madsen L, Kristiansen K. Xiao L, et al. Among authors: liu c. Nat Biotechnol. 2015 Oct;33(10):1103-8. doi: 10.1038/nbt.3353. Epub 2015 Sep 28. Nat Biotechnol. 2015. PMID: 26414350
A reference gene catalogue of the pig gut microbiome.
Xiao L, Estellé J, Kiilerich P, Ramayo-Caldas Y, Xia Z, Feng Q, Liang S, Pedersen AØ, Kjeldsen NJ, Liu C, Maguin E, Doré J, Pons N, Le Chatelier E, Prifti E, Li J, Jia H, Liu X, Xu X, Ehrlich SD, Madsen L, Kristiansen K, Rogel-Gaillard C, Wang J. Xiao L, et al. Among authors: liu x, liu c. Nat Microbiol. 2016 Sep 19;1:16161. doi: 10.1038/nmicrobiol.2016.161. Nat Microbiol. 2016. PMID: 27643971
1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses.
Zou Y, Xue W, Luo G, Deng Z, Qin P, Guo R, Sun H, Xia Y, Liang S, Dai Y, Wan D, Jiang R, Su L, Feng Q, Jie Z, Guo T, Xia Z, Liu C, Yu J, Lin Y, Tang S, Huo G, Xu X, Hou Y, Liu X, Wang J, Yang H, Kristiansen K, Li J, Jia H, Xiao L. Zou Y, et al. Among authors: liu x, liu c. Nat Biotechnol. 2019 Feb;37(2):179-185. doi: 10.1038/s41587-018-0008-8. Epub 2019 Feb 4. Nat Biotechnol. 2019. PMID: 30718868 Free PMC article.
Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa.
Zhu J, Tian L, Chen P, Han M, Song L, Tong X, Sun X, Yang F, Lin Z, Liu X, Liu C, Wang X, Lin Y, Cai K, Hou Y, Xu X, Yang H, Wang J, Kristiansen K, Xiao L, Zhang T, Jia H, Jie Z. Zhu J, et al. Among authors: liu x, liu c. Genomics Proteomics Bioinformatics. 2022 Apr;20(2):246-259. doi: 10.1016/j.gpb.2021.05.001. Epub 2021 Sep 4. Genomics Proteomics Bioinformatics. 2022. PMID: 34492339 Free PMC article.
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