Litfin T - Search Results

1

Probing RNA structures and functions by solvent accessibility: an overview from experimental and computational perspectives.

Solayman M, Litfin T, Singh J, Paliwal K, Zhou Y, Zhan J. Solayman M, et al. Among authors: litfin t. Brief Bioinform. 2022 May 13;23(3):bbac112. doi: 10.1093/bib/bbac112. Brief Bioinform. 2022. PMID: 35348613 Free PMC article. Review.

2

SPOT-ligand 2: improving structure-based virtual screening by binding-homology search on an expanded structural template library.

Litfin T, Zhou Y, Yang Y. Litfin T, et al. Bioinformatics. 2017 Apr 15;33(8):1238-1240. doi: 10.1093/bioinformatics/btw829. Bioinformatics. 2017. PMID: 28057679

3

Accurate prediction of protein contact maps by coupling residual two-dimensional bidirectional long short-term memory with convolutional neural networks.

Hanson J, Paliwal K, Litfin T, Yang Y, Zhou Y. Hanson J, et al. Among authors: litfin t. Bioinformatics. 2018 Dec 1;34(23):4039-4045. doi: 10.1093/bioinformatics/bty481. Bioinformatics. 2018. PMID: 29931279

4

YesU from Bacillus subtilis preferentially binds fucosylated glycans.

Tiralongo J, Cooper O, Litfin T, Yang Y, King R, Zhan J, Zhao H, Bovin N, Day CJ, Zhou Y. Tiralongo J, et al. Among authors: litfin t. Sci Rep. 2018 Sep 3;8(1):13139. doi: 10.1038/s41598-018-31241-8. Sci Rep. 2018. PMID: 30177739 Free PMC article.

5

Improving prediction of protein secondary structure, backbone angles, solvent accessibility and contact numbers by using predicted contact maps and an ensemble of recurrent and residual convolutional neural networks.

Hanson J, Paliwal K, Litfin T, Yang Y, Zhou Y. Hanson J, et al. Among authors: litfin t. Bioinformatics. 2019 Jul 15;35(14):2403-2410. doi: 10.1093/bioinformatics/bty1006. Bioinformatics. 2019. PMID: 30535134

6

SPOT-Peptide: Template-Based Prediction of Peptide-Binding Proteins and Peptide-Binding Sites.

Litfin T, Yang Y, Zhou Y. Litfin T, et al. J Chem Inf Model. 2019 Feb 25;59(2):924-930. doi: 10.1021/acs.jcim.8b00777. Epub 2019 Feb 14. J Chem Inf Model. 2019. PMID: 30698427

7

Getting to Know Your Neighbor: Protein Structure Prediction Comes of Age with Contextual Machine Learning.

Hanson J, Paliwal KK, Litfin T, Yang Y, Zhou Y. Hanson J, et al. Among authors: litfin t. J Comput Biol. 2020 May;27(5):796-814. doi: 10.1089/cmb.2019.0193. Epub 2019 Aug 30. J Comput Biol. 2020. PMID: 31390220

8

Nucleotide Sugar Transporter SLC35 Family Structure and Function.

Hadley B, Litfin T, Day CJ, Haselhorst T, Zhou Y, Tiralongo J. Hadley B, et al. Among authors: litfin t. Comput Struct Biotechnol J. 2019 Aug 7;17:1123-1134. doi: 10.1016/j.csbj.2019.08.002. eCollection 2019. Comput Struct Biotechnol J. 2019. PMID: 31462968 Free PMC article. Review.

9

Identifying molecular recognition features in intrinsically disordered regions of proteins by transfer learning.

Hanson J, Litfin T, Paliwal K, Zhou Y. Hanson J, et al. Among authors: litfin t. Bioinformatics. 2020 Feb 15;36(4):1107-1113. doi: 10.1093/bioinformatics/btz691. Bioinformatics. 2020. PMID: 31504193

10

SPOT-Fold: Fragment-Free Protein Structure Prediction Guided by Predicted Backbone Structure and Contact Map.

Cai Y, Li X, Sun Z, Lu Y, Zhao H, Hanson J, Paliwal K, Litfin T, Zhou Y, Yang Y. Cai Y, et al. Among authors: litfin t. J Comput Chem. 2020 Mar 30;41(8):745-750. doi: 10.1002/jcc.26132. Epub 2019 Dec 17. J Comput Chem. 2020. PMID: 31845383

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