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Rapid disorganization of mechanically interacting systems of mammary acini.
Shi Q, Ghosh RP, Engelke H, Rycroft CH, Cassereau L, Sethian JA, Weaver VM, Liphardt JT. Shi Q, et al. Among authors: liphardt jt. Proc Natl Acad Sci U S A. 2014 Jan 14;111(2):658-63. doi: 10.1073/pnas.1311312110. Epub 2013 Dec 30. Proc Natl Acad Sci U S A. 2014. PMID: 24379367 Free PMC article.
A fluorogenic array for temporally unlimited single-molecule tracking.
Ghosh RP, Franklin JM, Draper WE, Shi Q, Beltran B, Spakowitz AJ, Liphardt JT. Ghosh RP, et al. Among authors: liphardt jt. Nat Chem Biol. 2019 Apr;15(4):401-409. doi: 10.1038/s41589-019-0241-6. Epub 2019 Mar 11. Nat Chem Biol. 2019. PMID: 30858596
Stiff stroma increases breast cancer risk by inducing the oncogene ZNF217.
Northey JJ, Barrett AS, Acerbi I, Hayward MK, Talamantes S, Dean IS, Mouw JK, Ponik SM, Lakins JN, Huang PJ, Wu J, Shi Q, Samson S, Keely PJ, Mukhtar RA, Liphardt JT, Shepherd JA, Hwang ES, Chen YY, Hansen KC, Littlepage LE, Weaver VM. Northey JJ, et al. Among authors: liphardt jt. J Clin Invest. 2020 Nov 2;130(11):5721-5737. doi: 10.1172/JCI129249. J Clin Invest. 2020. PMID: 32721948 Free PMC article. Clinical Trial.
ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing.
Chen X, Shen Y, Draper W, Buenrostro JD, Litzenburger U, Cho SW, Satpathy AT, Carter AC, Ghosh RP, East-Seletsky A, Doudna JA, Greenleaf WJ, Liphardt JT, Chang HY. Chen X, et al. Among authors: liphardt jt. Nat Methods. 2016 Dec;13(12):1013-1020. doi: 10.1038/nmeth.4031. Epub 2016 Oct 17. Nat Methods. 2016. PMID: 27749837 Free PMC article.
NuSeT: A deep learning tool for reliably separating and analyzing crowded cells.
Yang L, Ghosh RP, Franklin JM, Chen S, You C, Narayan RR, Melcher ML, Liphardt JT. Yang L, et al. Among authors: liphardt jt. PLoS Comput Biol. 2020 Sep 14;16(9):e1008193. doi: 10.1371/journal.pcbi.1008193. eCollection 2020 Sep. PLoS Comput Biol. 2020. PMID: 32925919 Free PMC article.
48 results