Lindorff-Larsen K - Search Results

1

Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop.

Oxenfarth A, Kümmerer F, Bottaro S, Schnieders R, Pinter G, Jonker HRA, Fürtig B, Richter C, Blackledge M, Lindorff-Larsen K, Schwalbe H. Oxenfarth A, et al. J Am Chem Soc. 2023 Aug 2;145(30):16557-16572. doi: 10.1021/jacs.3c03578. Epub 2023 Jul 21. J Am Chem Soc. 2023. PMID: 37479220 Free PMC article.

2

PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure.

Boomsma W, Frellsen J, Harder T, Bottaro S, Johansson KE, Tian P, Stovgaard K, Andreetta C, Olsson S, Valentin JB, Antonov LD, Christensen AS, Borg M, Jensen JH, Lindorff-Larsen K, Ferkinghoff-Borg J, Hamelryck T. Boomsma W, et al. J Comput Chem. 2013 Jul 15;34(19):1697-705. doi: 10.1002/jcc.23292. Epub 2013 Apr 26. J Comput Chem. 2013. PMID: 23619610

3

Variational Optimization of an All-Atom Implicit Solvent Force Field to Match Explicit Solvent Simulation Data.

Bottaro S, Lindorff-Larsen K, Best RB. Bottaro S, et al. J Chem Theory Comput. 2013 Dec 10;9(12):5641-5652. doi: 10.1021/ct400730n. J Chem Theory Comput. 2013. PMID: 24748852 Free PMC article.

4

Correction to Variational Optimization of an All-Atom Implicit Solvent Force Field To Match Explicit Solvent Simulation Data.

Bottaro S, Lindorff-Larsen K, Best RB. Bottaro S, et al. J Chem Theory Comput. 2017 Jan 10;13(1):392. doi: 10.1021/acs.jctc.6b01188. Epub 2016 Dec 19. J Chem Theory Comput. 2017. PMID: 27990814 Free PMC article. No abstract available.

5

Mapping the Universe of RNA Tetraloop Folds.

Bottaro S, Lindorff-Larsen K. Bottaro S, et al. Biophys J. 2017 Jul 25;113(2):257-267. doi: 10.1016/j.bpj.2017.06.011. Epub 2017 Jun 30. Biophys J. 2017. PMID: 28673616 Free PMC article.

6

Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations.

Bottaro S, Bussi G, Kennedy SD, Turner DH, Lindorff-Larsen K. Bottaro S, et al. Sci Adv. 2018 May 18;4(5):eaar8521. doi: 10.1126/sciadv.aar8521. eCollection 2018 May. Sci Adv. 2018. PMID: 29795785 Free PMC article.

7

Biophysical experiments and biomolecular simulations: A perfect match?

Bottaro S, Lindorff-Larsen K. Bottaro S, et al. Science. 2018 Jul 27;361(6400):355-360. doi: 10.1126/science.aat4010. Science. 2018. PMID: 30049874 Review.

8

Barnaba: software for analysis of nucleic acid structures and trajectories.

Bottaro S, Bussi G, Pinamonti G, Reißer S, Boomsma W, Lindorff-Larsen K. Bottaro S, et al. RNA. 2019 Feb;25(2):219-231. doi: 10.1261/rna.067678.118. Epub 2018 Nov 12. RNA. 2019. PMID: 30420522 Free PMC article.

9

Fitting Corrections to an RNA Force Field Using Experimental Data.

Cesari A, Bottaro S, Lindorff-Larsen K, Banáš P, Šponer J, Bussi G. Cesari A, et al. J Chem Theory Comput. 2019 Jun 11;15(6):3425-3431. doi: 10.1021/acs.jctc.9b00206. Epub 2019 May 23. J Chem Theory Comput. 2019. PMID: 31050905

10

Integrating Molecular Simulation and Experimental Data: A Bayesian/Maximum Entropy Reweighting Approach.

Bottaro S, Bengtsen T, Lindorff-Larsen K. Bottaro S, et al. Methods Mol Biol. 2020;2112:219-240. doi: 10.1007/978-1-0716-0270-6_15. Methods Mol Biol. 2020. PMID: 32006288

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

235 results

Search Page