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Analytical and clinical validation of a microbial cell-free DNA sequencing test for infectious disease.
Blauwkamp TA, Thair S, Rosen MJ, Blair L, Lindner MS, Vilfan ID, Kawli T, Christians FC, Venkatasubrahmanyam S, Wall GD, Cheung A, Rogers ZN, Meshulam-Simon G, Huijse L, Balakrishnan S, Quinn JV, Hollemon D, Hong DK, Vaughn ML, Kertesz M, Bercovici S, Wilber JC, Yang S. Blauwkamp TA, et al. Among authors: lindner ms. Nat Microbiol. 2019 Apr;4(4):663-674. doi: 10.1038/s41564-018-0349-6. Epub 2019 Feb 11. Nat Microbiol. 2019. PMID: 30742071
Rapid, Noninvasive Diagnosis of Balamuthia mandrillaris Encephalitis by a Plasma-Based Next-Generation Sequencing Test.
Kalyatanda G, Rand K, Lindner MS, Hong DK, Sait Albayram M, Gregory J, Kresak J, Ibne KMA, Cope JR, Roy S, Gary JM, Reddy V, Ahmed AA. Kalyatanda G, et al. Among authors: lindner ms. Open Forum Infect Dis. 2020 Jun 1;7(7):ofaa189. doi: 10.1093/ofid/ofaa189. eCollection 2020 Jul. Open Forum Infect Dis. 2020. PMID: 32715017 Free PMC article.
DUDes: a top-down taxonomic profiler for metagenomics.
Piro VC, Lindner MS, Renard BY. Piro VC, et al. Among authors: lindner ms. Bioinformatics. 2016 Aug 1;32(15):2272-80. doi: 10.1093/bioinformatics/btw150. Epub 2016 Mar 24. Bioinformatics. 2016. PMID: 27153591
HiLive: real-time mapping of illumina reads while sequencing.
Lindner MS, Strauch B, Schulze JM, Tausch SH, Dabrowski PW, Nitsche A, Renard BY. Lindner MS, et al. Bioinformatics. 2017 Mar 15;33(6):917-319. doi: 10.1093/bioinformatics/btw659. Bioinformatics. 2017. PMID: 27794555
LiveKraken--real-time metagenomic classification of illumina data.
Tausch SH, Strauch B, Andrusch A, Loka TP, Lindner MS, Nitsche A, Renard BY. Tausch SH, et al. Among authors: lindner ms. Bioinformatics. 2018 Nov 1;34(21):3750-3752. doi: 10.1093/bioinformatics/bty433. Bioinformatics. 2018. PMID: 29868852
19 results