Lin YY - Search Results

1

Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA.

Gawroński AR, Lin YY, McConeghy B, LeBihan S, Asghari H, Koçkan C, Orabi B, Adra N, Pili R, Collins CC, Sahinalp SC, Hach F. Gawroński AR, et al. Among authors: lin yy. Nucleic Acids Res. 2019 Apr 23;47(7):e38. doi: 10.1093/nar/gkz067. Nucleic Acids Res. 2019. PMID: 30759232 Free PMC article.

2

ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.

Dao P, Numanagić I, Lin YY, Hach F, Karakoc E, Donmez N, Collins C, Eichler EE, Sahinalp SC. Dao P, et al. Among authors: lin yy. Bioinformatics. 2014 Mar 1;30(5):644-51. doi: 10.1093/bioinformatics/btt591. Epub 2013 Oct 15. Bioinformatics. 2014. PMID: 24130305

3

Discovery and genotyping of novel sequence insertions in many sequenced individuals.

Kavak P, Lin YY, Numanagic I, Asghari H, Güngör T, Alkan C, Hach F. Kavak P, et al. Among authors: lin yy. Bioinformatics. 2017 Jul 15;33(14):i161-i169. doi: 10.1093/bioinformatics/btx254. Bioinformatics. 2017. PMID: 28881988 Free PMC article.

4

Mutational Analysis of Gene Fusions Predicts Novel MHC Class I-Restricted T-Cell Epitopes and Immune Signatures in a Subset of Prostate Cancer.

Kalina JL, Neilson DS, Lin YY, Hamilton PT, Comber AP, Loy EMH, Sahinalp SC, Collins CC, Hach F, Lum JJ. Kalina JL, et al. Among authors: lin yy. Clin Cancer Res. 2017 Dec 15;23(24):7596-7607. doi: 10.1158/1078-0432.CCR-17-0618. Epub 2017 Sep 27. Clin Cancer Res. 2017. PMID: 28954787 Free PMC article.

5

Establishment of a neuroendocrine prostate cancer model driven by the RNA splicing factor SRRM4.

Li Y, Chen R, Bowden M, Mo F, Lin YY, Gleave M, Collins C, Dong X. Li Y, et al. Among authors: lin yy. Oncotarget. 2017 Aug 3;8(40):66878-66888. doi: 10.18632/oncotarget.19916. eCollection 2017 Sep 15. Oncotarget. 2017. PMID: 28978002 Free PMC article.

6

Computational identification of micro-structural variations and their proteogenomic consequences in cancer.

Lin YY, Gawronski A, Hach F, Li S, Numanagic I, Sarrafi I, Mishra S, McPherson A, Collins CC, Radovich M, Tang H, Sahinalp SC. Lin YY, et al. Bioinformatics. 2018 May 15;34(10):1672-1681. doi: 10.1093/bioinformatics/btx807. Bioinformatics. 2018. PMID: 29267878 Free PMC article.

7

MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions.

Gawronski AR, Uhl M, Zhang Y, Lin YY, Niknafs YS, Ramnarine VR, Malik R, Feng F, Chinnaiyan AM, Collins CC, Sahinalp SC, Backofen R. Gawronski AR, et al. Among authors: lin yy. Bioinformatics. 2018 Sep 15;34(18):3101-3110. doi: 10.1093/bioinformatics/bty208. Bioinformatics. 2018. PMID: 29617966 Free PMC article.

8

BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma.

Shrestha R, Nabavi N, Lin YY, Mo F, Anderson S, Volik S, Adomat HH, Lin D, Xue H, Dong X, Shukin R, Bell RH, McConeghy B, Haegert A, Brahmbhatt S, Li E, Oo HZ, Hurtado-Coll A, Fazli L, Zhou J, McConnell Y, McCart A, Lowy A, Morin GB, Chen T, Daugaard M, Sahinalp SC, Hach F, Le Bihan S, Gleave ME, Wang Y, Churg A, Collins CC. Shrestha R, et al. Among authors: lin d, lin yy. Genome Med. 2019 Feb 18;11(1):8. doi: 10.1186/s13073-019-0620-3. Genome Med. 2019. PMID: 30777124 Free PMC article.

9

Identification of gene signature for treatment response to guide precision oncology in clear-cell renal cell carcinoma.

D'Costa NM, Cina D, Shrestha R, Bell RH, Lin YY, Asghari H, Monjaras-Avila CU, Kollmannsberger C, Hach F, Chavez-Munoz CI, So AI. D'Costa NM, et al. Among authors: lin yy. Sci Rep. 2020 Feb 6;10(1):2026. doi: 10.1038/s41598-020-58804-y. Sci Rep. 2020. PMID: 32029828 Free PMC article.

10

CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme.

Asghari H, Lin YY, Xu Y, Haghshenas E, Collins CC, Hach F. Asghari H, et al. Among authors: lin yy. Bioinformatics. 2020 Jun 1;36(12):3703-3711. doi: 10.1093/bioinformatics/btaa232. Bioinformatics. 2020. PMID: 32259207

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