Lin J - Search Results

1

Haplotype-resolved diverse human genomes and integrated analysis of structural variation.

Ebert P, Audano PA, Zhu Q, Rodriguez-Martin B, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W, Serra Mari R, Yilmaz F, Zhao X, Hsieh P, Lee J, Kumar S, Lin J, Rausch T, Chen Y, Ren J, Santamarina M, Höps W, Ashraf H, Chuang NT, Yang X, Munson KM, Lewis AP, Fairley S, Tallon LJ, Clarke WE, Basile AO, Byrska-Bishop M, Corvelo A, Evani US, Lu TY, Chaisson MJP, Chen J, Li C, Brand H, Wenger AM, Ghareghani M, Harvey WT, Raeder B, Hasenfeld P, Regier AA, Abel HJ, Hall IM, Flicek P, Stegle O, Gerstein MB, Tubio JMC, Mu Z, Li YI, Shi X, Hastie AR, Ye K, Chong Z, Sanders AD, Zody MC, Talkowski ME, Mills RE, Devine SE, Lee C, Korbel JO, Marschall T, Eichler EE. Ebert P, et al. Among authors: lin j. Science. 2021 Apr 2;372(6537):eabf7117. doi: 10.1126/science.abf7117. Epub 2021 Feb 25. Science. 2021. PMID: 33632895 Free PMC article.

2

PVTree: A Sequential Pattern Mining Method for Alignment Independent Phylogeny Reconstruction.

Kang Y, Yang X, Lin J, Ye K. Kang Y, et al. Among authors: lin j. Genes (Basel). 2019 Jan 22;10(2):73. doi: 10.3390/genes10020073. Genes (Basel). 2019. PMID: 30678245 Free PMC article.

3

MEpurity: estimating tumor purity using DNA methylation data.

Liu B, Yang X, Wang T, Lin J, Kang Y, Jia P, Ye K. Liu B, et al. Among authors: lin j. Bioinformatics. 2019 Dec 15;35(24):5298-5300. doi: 10.1093/bioinformatics/btz555. Bioinformatics. 2019. PMID: 31297508

4

MSIsensor-pro: Fast, Accurate, and Matched-normal-sample-free Detection of Microsatellite Instability.

Jia P, Yang X, Guo L, Liu B, Lin J, Liang H, Sun J, Zhang C, Ye K. Jia P, et al. Among authors: lin j. Genomics Proteomics Bioinformatics. 2020 Feb;18(1):65-71. doi: 10.1016/j.gpb.2020.02.001. Epub 2020 Mar 12. Genomics Proteomics Bioinformatics. 2020. PMID: 32171661 Free PMC article.

5

Predicting the early risk of ophthalmopathy in Graves' disease patients using TCR repertoire.

Wang Y, Liu Y, Yang X, Guo H, Lin J, Yang J, He M, Wang J, Liu X, Shi T, Wu L, Zhang C, Ye K, Shi B. Wang Y, et al. Among authors: lin j. Clin Transl Med. 2020 Nov;10(7):e218. doi: 10.1002/ctm2.218. Clin Transl Med. 2020. PMID: 33252854 Free PMC article. No abstract available.

6

Mako: A Graph-based Pattern Growth Approach to Detect Complex Structural Variants.

Lin J, Yang X, Kosters W, Xu T, Jia Y, Wang S, Zhu Q, Ryan M, Guo L, Zhang C; Human Genome Structural Variation Consortium; Lee C, Devine SE, Eichler EE, Ye K. Lin J, et al. Genomics Proteomics Bioinformatics. 2022 Feb;20(1):205-218. doi: 10.1016/j.gpb.2021.03.007. Epub 2021 Jul 3. Genomics Proteomics Bioinformatics. 2022. PMID: 34224879 Free PMC article.

7

Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway.

Yang X, Gao S, Guo L, Wang B, Jia Y, Zhou J, Che Y, Jia P, Lin J, Xu T, Sun J, Ye K. Yang X, et al. Among authors: lin j. Nat Commun. 2021 Oct 15;12(1):6030. doi: 10.1038/s41467-021-26330-8. Nat Commun. 2021. PMID: 34654815 Free PMC article.

8

A global survey of the transcriptome of the opium poppy (Papaver somniferum) based on single-molecule long-read isoform sequencing.

Xu T, Yang X, Jia Y, Li Z, Tang G, Li X, Wang B, Wang T, Lin J, Guo L, Ye K. Xu T, et al. Among authors: lin j. Plant J. 2022 Apr;110(2):607-620. doi: 10.1111/tpj.15689. Epub 2022 Feb 26. Plant J. 2022. PMID: 35092713 Free article.

9

High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios.

Byrska-Bishop M, Evani US, Zhao X, Basile AO, Abel HJ, Regier AA, Corvelo A, Clarke WE, Musunuri R, Nagulapalli K, Fairley S, Runnels A, Winterkorn L, Lowy E; Human Genome Structural Variation Consortium; Paul Flicek, Germer S, Brand H, Hall IM, Talkowski ME, Narzisi G, Zody MC. Byrska-Bishop M, et al. Cell. 2022 Sep 1;185(18):3426-3440.e19. doi: 10.1016/j.cell.2022.08.004. Cell. 2022. PMID: 36055201 Free PMC article.

10

SVision: a deep learning approach to resolve complex structural variants.

Lin J, Wang S, Audano PA, Meng D, Flores JI, Kosters W, Yang X, Jia P, Marschall T, Beck CR, Ye K. Lin J, et al. Nat Methods. 2022 Oct;19(10):1230-1233. doi: 10.1038/s41592-022-01609-w. Epub 2022 Sep 16. Nat Methods. 2022. PMID: 36109679 Free PMC article.

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