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Identification of a Blood-Based Protein Biomarker Panel for Lung Cancer Detection.
El-Khoury V, Schritz A, Kim SY, Lesur A, Sertamo K, Bernardin F, Petritis K, Pirrotte P, Selinsky C, Whiteaker JR, Zhang H, Kennedy JJ, Lin C, Lee LW, Yan P, Tran NL, Inge LJ, Chalabi K, Decker G, Bjerkvig R, Paulovich AG, Berchem G, Kim YJ. El-Khoury V, et al. Among authors: lin c. Cancers (Basel). 2020 Jun 19;12(6):1629. doi: 10.3390/cancers12061629. Cancers (Basel). 2020. PMID: 32575471 Free PMC article.
Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.
Rauch A, Bellew M, Eng J, Fitzgibbon M, Holzman T, Hussey P, Igra M, Maclean B, Lin CW, Detter A, Fang R, Faca V, Gafken P, Zhang H, Whiteaker J, States D, Hanash S, Paulovich A, McIntosh MW. Rauch A, et al. J Proteome Res. 2006 Jan;5(1):112-21. doi: 10.1021/pr0503533. J Proteome Res. 2006. PMID: 16396501
Head-to-head comparison of serum fractionation techniques.
Whiteaker JR, Zhang H, Eng JK, Fang R, Piening BD, Feng LC, Lorentzen TD, Schoenherr RM, Keane JF, Holzman T, Fitzgibbon M, Lin C, Zhang H, Cooke K, Liu T, Camp DG 2nd, Anderson L, Watts J, Smith RD, McIntosh MW, Paulovich AG. Whiteaker JR, et al. Among authors: lin c. J Proteome Res. 2007 Feb;6(2):828-36. doi: 10.1021/pr0604920. J Proteome Res. 2007. PMID: 17269739
Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer.
Schoenherr RM, Kelly-Spratt KS, Lin C, Whiteaker JR, Liu T, Holzman T, Coleman I, Feng LC, Lorentzen TD, Krasnoselsky AL, Wang P, Liu Y, Gurley KE, Amon LM, Schepmoes AA, Moore RJ, Camp DG 2nd, Chodosh LA, Smith RD, Nelson PS, McIntosh MW, Kemp CJ, Paulovich AG. Schoenherr RM, et al. Among authors: lin c. Proteomics Clin Appl. 2011 Apr;5(3-4):179-88. doi: 10.1002/prca.201000037. Epub 2011 Feb 15. Proteomics Clin Appl. 2011. PMID: 21448875 Free PMC article.
A targeted proteomics-based pipeline for verification of biomarkers in plasma.
Whiteaker JR, Lin C, Kennedy J, Hou L, Trute M, Sokal I, Yan P, Schoenherr RM, Zhao L, Voytovich UJ, Kelly-Spratt KS, Krasnoselsky A, Gafken PR, Hogan JM, Jones LA, Wang P, Amon L, Chodosh LA, Nelson PS, McIntosh MW, Kemp CJ, Paulovich AG. Whiteaker JR, et al. Among authors: lin c. Nat Biotechnol. 2011 Jun 19;29(7):625-34. doi: 10.1038/nbt.1900. Nat Biotechnol. 2011. PMID: 21685906 Free PMC article.
Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins.
Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Kennedy JJ, et al. Among authors: lin c. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. Nat Methods. 2014. PMID: 24317253 Free PMC article.
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