Liachko I - Search Results

1

Chromosome-level genome assembly of Mentha longifolia L. reveals gene organization underlying disease resistance and essential oil traits.

Vining KJ, Pandelova I, Lange I, Parrish AN, Lefors A, Kronmiller B, Liachko I, Kronenberg Z, Srividya N, Lange BM. Vining KJ, et al. Among authors: liachko i. G3 (Bethesda). 2022 Jul 29;12(8):jkac112. doi: 10.1093/g3journal/jkac112. G3 (Bethesda). 2022. PMID: 35551385 Free PMC article.

2

Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data.

Jibran R, Dzierzon H, Bassil N, Bushakra JM, Edger PP, Sullivan S, Finn CE, Dossett M, Vining KJ, VanBuren R, Mockler TC, Liachko I, Davies KM, Foster TM, Chagné D. Jibran R, et al. Among authors: liachko i. Hortic Res. 2018 Feb 7;5:8. doi: 10.1038/s41438-017-0013-y. eCollection 2018. Hortic Res. 2018. PMID: 29423238 Free PMC article.

3

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome.

VanBuren R, Wai CM, Colle M, Wang J, Sullivan S, Bushakra JM, Liachko I, Vining KJ, Dossett M, Finn CE, Jibran R, Chagné D, Childs K, Edger PP, Mockler TC, Bassil NV. VanBuren R, et al. Among authors: liachko i. Gigascience. 2018 Aug 1;7(8):giy094. doi: 10.1093/gigascience/giy094. Gigascience. 2018. PMID: 30107523 Free PMC article.

4

Genome sequence of Monilinia vaccinii-corymbosi sheds light on mummy berry disease infection of blueberry and mating type.

Yow AG, Zhang Y, Bansal K, Eacker SM, Sullivan S, Liachko I, Cubeta MA, Rollins JA, Ashrafi H. Yow AG, et al. Among authors: liachko i. G3 (Bethesda). 2021 Feb 9;11(2):jkaa052. doi: 10.1093/g3journal/jkaa052. G3 (Bethesda). 2021. PMID: 33598705 Free PMC article.

5

Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.

Kronenberg ZN, Rhie A, Koren S, Concepcion GT, Peluso P, Munson KM, Porubsky D, Kuhn K, Mueller KA, Low WY, Hiendleder S, Fedrigo O, Liachko I, Hall RJ, Phillippy AM, Eichler EE, Williams JL, Smith TPL, Jarvis ED, Sullivan ST, Kingan SB. Kronenberg ZN, et al. Among authors: liachko i. Nat Commun. 2021 Apr 28;12(1):1935. doi: 10.1038/s41467-020-20536-y. Nat Commun. 2021. PMID: 33911078 Free PMC article.

6

Species-level deconvolution of metagenome assemblies with Hi-C-based contact probability maps.

Burton JN, Liachko I, Dunham MJ, Shendure J. Burton JN, et al. Among authors: liachko i. G3 (Bethesda). 2014 May 22;4(7):1339-46. doi: 10.1534/g3.114.011825. G3 (Bethesda). 2014. PMID: 24855317 Free PMC article.

7

High Throughput Analyses of Budding Yeast ARSs Reveal New DNA Elements Capable of Conferring Centromere-Independent Plasmid Propagation.

Hoggard T, Liachko I, Burt C, Meikle T, Jiang K, Craciun G, Dunham MJ, Fox CA. Hoggard T, et al. Among authors: liachko i. G3 (Bethesda). 2016 Apr 7;6(4):993-1012. doi: 10.1534/g3.116.027904. G3 (Bethesda). 2016. PMID: 26865697 Free PMC article.

8

The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol.

McCartney MA, Auch B, Kono T, Mallez S, Zhang Y, Obille A, Becker A, Abrahante JE, Garbe J, Badalamenti JP, Herman A, Mangelson H, Liachko I, Sullivan S, Sone ED, Koren S, Silverstein KAT, Beckman KB, Gohl DM. McCartney MA, et al. Among authors: liachko i. G3 (Bethesda). 2022 Feb 4;12(2):jkab423. doi: 10.1093/g3journal/jkab423. G3 (Bethesda). 2022. PMID: 34897429 Free PMC article.

9

Chromosome-scale genome assembly of the sea louse Caligus rogercresseyi by SMRT sequencing and Hi-C analysis.

Gallardo-Escárate C, Valenzuela-Muñoz V, Nuñez-Acuña G, Valenzuela-Miranda D, Gonçalves AT, Escobar-Sepulveda H, Liachko I, Nelson B, Roberts S, Warren W. Gallardo-Escárate C, et al. Among authors: liachko i. Sci Data. 2021 Feb 11;8(1):60. doi: 10.1038/s41597-021-00842-w. Sci Data. 2021. PMID: 33574331 Free PMC article.

10

The dynamic three-dimensional organization of the diploid yeast genome.

Kim S, Liachko I, Brickner DG, Cook K, Noble WS, Brickner JH, Shendure J, Dunham MJ. Kim S, et al. Among authors: liachko i. Elife. 2017 May 24;6:e23623. doi: 10.7554/eLife.23623. Elife. 2017. PMID: 28537556 Free PMC article.

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