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Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.
Chen L, Qiu Q, Jiang Y, Wang K, Lin Z, Li Z, Bibi F, Yang Y, Wang J, Nie W, Su W, Liu G, Li Q, Fu W, Pan X, Liu C, Yang J, Zhang C, Yin Y, Wang Y, Zhao Y, Zhang C, Wang Z, Qin Y, Liu W, Wang B, Ren Y, Zhang R, Zeng Y, da Fonseca RR, Wei B, Li R, Wan W, Zhao R, Zhu W, Wang Y, Duan S, Gao Y, Zhang YE, Chen C, Hvilsom C, Epps CW, Chemnick LG, Dong Y, Mirarab S, Siegismund HR, Ryder OA, Gilbert MTP, Lewin HA, Zhang G, Heller R, Wang W. Chen L, et al. Among authors: li z, li q, li r. Science. 2019 Jun 21;364(6446):eaav6202. doi: 10.1126/science.aav6202. Science. 2019. PMID: 31221828
Draft genome of the reindeer (Rangifer tarandus).
Li Z, Lin Z, Ba H, Chen L, Yang Y, Wang K, Qiu Q, Wang W, Li G. Li Z, et al. Among authors: li g. Gigascience. 2017 Dec 1;6(12):1-5. doi: 10.1093/gigascience/gix102. Gigascience. 2017. PMID: 29099922 Free PMC article.
MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements.
Rey-Iglesia A, Gopalakrishan S, Carøe C, Alquezar-Planas DE, Ahlmann Nielsen A, Röder T, Bruhn Pedersen L, Naesborg-Nielsen C, Sinding MS, Fredensborg Rath M, Li Z, Petersen B, Gilbert MTP, Bunce M, Mourier T, Hansen AJ. Rey-Iglesia A, et al. Among authors: li z. Mol Ecol Resour. 2019 Mar;19(2):512-525. doi: 10.1111/1755-0998.12984. Epub 2019 Feb 6. Mol Ecol Resour. 2019. PMID: 30575257
Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus).
Lin Z, Chen L, Chen X, Zhong Y, Yang Y, Xia W, Liu C, Zhu W, Wang H, Yan B, Yang Y, Liu X, Sternang Kvie K, Røed KH, Wang K, Xiao W, Wei H, Li G, Heller R, Gilbert MTP, Qiu Q, Wang W, Li Z. Lin Z, et al. Among authors: li z, li g. Science. 2019 Jun 21;364(6446):eaav6312. doi: 10.1126/science.aav6312. Science. 2019. PMID: 31221829
Genetic basis of ruminant headgear and rapid antler regeneration.
Wang Y, Zhang C, Wang N, Li Z, Heller R, Liu R, Zhao Y, Han J, Pan X, Zheng Z, Dai X, Chen C, Dou M, Peng S, Chen X, Liu J, Li M, Wang K, Liu C, Lin Z, Chen L, Hao F, Zhu W, Song C, Zhao C, Zheng C, Wang J, Hu S, Li C, Yang H, Jiang L, Li G, Liu M, Sonstegard TS, Zhang G, Jiang Y, Wang W, Qiu Q. Wang Y, et al. Among authors: li c, li z, li g, li m. Science. 2019 Jun 21;364(6446):eaav6335. doi: 10.1126/science.aav6335. Science. 2019. PMID: 31221830
Modes of genetic adaptations underlying functional innovations in the rumen.
Pan X, Cai Y, Li Z, Chen X, Heller R, Wang N, Wang Y, Zhao C, Wang Y, Xu H, Li S, Li M, Li C, Hu S, Li H, Wang K, Chen L, Wei B, Zheng Z, Fu W, Yang Y, Zhang T, Hou Z, Yan Y, Lv X, Sun W, Li X, Huang S, Liu L, Mao S, Liu W, Hua J, Li Z, Zhang G, Chen Y, Wang X, Qiu Q, Dalrymple BP, Wang W, Jiang Y. Pan X, et al. Among authors: li s, li c, li z, li h, li x, li m. Sci China Life Sci. 2021 Jan;64(1):1-21. doi: 10.1007/s11427-020-1828-8. Epub 2020 Nov 5. Sci China Life Sci. 2021. PMID: 33165812
A towering genome: Experimentally validated adaptations to high blood pressure and extreme stature in the giraffe.
Liu C, Gao J, Cui X, Li Z, Chen L, Yuan Y, Zhang Y, Mei L, Zhao L, Cai D, Hu M, Zhou B, Li Z, Qin T, Si H, Li G, Lin Z, Xu Y, Zhu C, Yin Y, Zhang C, Xu W, Li Q, Wang K, Gilbert MTP, Heller R, Wang W, Huang J, Qiu Q. Liu C, et al. Among authors: li z, li g, li q. Sci Adv. 2021 Mar 17;7(12):eabe9459. doi: 10.1126/sciadv.abe9459. Print 2021 Mar. Sci Adv. 2021. PMID: 33731352 Free PMC article.
An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants.
Xie F, Jin W, Si H, Yuan Y, Tao Y, Liu J, Wang X, Yang C, Li Q, Yan X, Lin L, Jiang Q, Zhang L, Guo C, Greening C, Heller R, Guan LL, Pope PB, Tan Z, Zhu W, Wang M, Qiu Q, Li Z, Mao S. Xie F, et al. Among authors: li z, li q. Microbiome. 2021 Jun 12;9(1):137. doi: 10.1186/s40168-021-01078-x. Microbiome. 2021. PMID: 34118976 Free PMC article.
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