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Monoallelic IFT140 pathogenic variants are an important cause of the autosomal dominant polycystic kidney-spectrum phenotype.
Am J Hum Genet. 2022 Jan 6;109(1):136-156. doi: 10.1016/j.ajhg.2021.11.016. Epub 2021 Dec 9.
Am J Hum Genet. 2022.
PMID: 34890546
Free PMC article.
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.
Asmann YW, Middha S, Hossain A, Baheti S, Li Y, Chai HS, Sun Z, Duffy PH, Hadad AA, Nair A, Liu X, Zhang Y, Klee EW, Kalari KR, Kocher JP.
Asmann YW, et al.
Bioinformatics. 2012 Jan 15;28(2):277-8. doi: 10.1093/bioinformatics/btr612. Epub 2011 Nov 15.
Bioinformatics. 2012.
PMID: 22088845
Free PMC article.
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Irritable bowel syndrome-diarrhea: characterization of genotype by exome sequencing, and phenotypes of bile acid synthesis and colonic transit.
Camilleri M, Klee EW, Shin A, Carlson P, Li Y, Grover M, Zinsmeister AR.
Camilleri M, et al.
Am J Physiol Gastrointest Liver Physiol. 2014 Jan 1;306(1):G13-26. doi: 10.1152/ajpgi.00294.2013. Epub 2013 Nov 7.
Am J Physiol Gastrointest Liver Physiol. 2014.
PMID: 24200957
Free PMC article.
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HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.
Yan H, Evans J, Kalmbach M, Moore R, Middha S, Luban S, Wang L, Bhagwate A, Li Y, Sun Z, Chen X, Kocher JP.
Yan H, et al.
BMC Bioinformatics. 2014 Aug 15;15(1):280. doi: 10.1186/1471-2105-15-280.
BMC Bioinformatics. 2014.
PMID: 25128017
Free PMC article.
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Measure transcript integrity using RNA-seq data.
Wang L, Nie J, Sicotte H, Li Y, Eckel-Passow JE, Dasari S, Vedell PT, Barman P, Wang L, Weinshiboum R, Jen J, Huang H, Kohli M, Kocher JP.
Wang L, et al.
BMC Bioinformatics. 2016 Feb 3;17:58. doi: 10.1186/s12859-016-0922-z.
BMC Bioinformatics. 2016.
PMID: 26842848
Free PMC article.
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Polymorphisms in metabolism/antioxidant genes may mediate the effect of dietary intake on pancreatic cancer risk.
Jansen RJ, Robinson DP, Stolzenberg-Solomon RZ, Bamlet WR, Tan X, Cunningham JM, Li Y, Rider DN, Oberg AL, Rabe KG, Anderson KE, Sinha R, Petersen GM.
Jansen RJ, et al.
Pancreas. 2013 Oct;42(7):1043-53. doi: 10.1097/MPA.0b013e3182968e00.
Pancreas. 2013.
PMID: 24051964
Free PMC article.
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Salvage therapy expands highly cytotoxic and metabolically fit resilient CD8+ T cells via ME1 up-regulation.
Gicobi JK, Mao Z, DeFranco G, Hirdler JB, Li Y, Vianzon VV, Dellacecca ER, Hsu MA, Barham W, Yan Y, Mansfield AS, Lin Y, Wu X, Hitosugi T, Owen D, Grams MP, Orme JJ, Lucien F, Zeng H, Park SS, Dong H.
Gicobi JK, et al.
Sci Adv. 2023 Nov 17;9(46):eadi2414. doi: 10.1126/sciadv.adi2414. Epub 2023 Nov 15.
Sci Adv. 2023.
PMID: 37967193
Free PMC article.
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Molecular Profile Changes in Patients with Castrate-Resistant Prostate Cancer Pre- and Post-Abiraterone/Prednisone Treatment.
Sicotte H, Kalari KR, Qin S, Dehm SM, Bhargava V, Gormley M, Tan W, Sinnwell JP, Hillman DW, Li Y, Vedell PT, Carlson RE, Bryce AH, Jimenez RE, Weinshilboum RM, Kohli M, Wang L.
Sicotte H, et al.
Mol Cancer Res. 2022 Dec 2;20(12):1739-1750. doi: 10.1158/1541-7786.MCR-22-0099.
Mol Cancer Res. 2022.
PMID: 36135372
Free PMC article.
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