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Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps.
Sharma SK, Bolser D, de Boer J, Sønderkær M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS, Eguiluz M, Guo X, Guzman F, Hackett CA, Hamilton JP, Li G, Li Y, Lozano R, Maass A, Marshall D, Martinez D, McLean K, Mejía N, Milne L, Munive S, Nagy I, Ponce O, Ramirez M, Simon R, Thomson SJ, Torres Y, Waugh R, Zhang Z, Huang S, Visser RG, Bachem CW, Sagredo B, Feingold SE, Orjeda G, Veilleux RE, Bonierbale M, Jacobs JM, Milbourne D, Martin DM, Bryan GJ. Sharma SK, et al. Among authors: li y, li g. G3 (Bethesda). 2013 Nov 6;3(11):2031-47. doi: 10.1534/g3.113.007153. G3 (Bethesda). 2013. PMID: 24062527 Free PMC article.
Genome sequence and analysis of the tuber crop potato.
Potato Genome Sequencing Consortium; Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, Orjeda G, Guzman F, Torres M, Lozano R, Ponce O, Martinez D, De la Cruz G, Chakrabarti SK, Patil VU, Skryabin KG, Kuznetsov BB, Ravin NV, Kolganova TV, Beletsky AV, Mardanov AV, Di Genova A, Bolser DM, Martin DM, Li G, Yang Y, Kuang H, Hu Q, Xiong X, Bishop GJ, Sagredo B, Mejía N, Zagorski W, Gromadka R, Gawor J, Szczesny P, Huang S, Zhang Z, Liang C, He J, Li Y, He Y, Xu J, Zhang Y, Xie B, Du Y, Qu D, Bonierbale M, Ghislain M, Herrera Mdel R, Giuliano G, Pietrella M, Perrotta G, Facella P, O'Brien K, Feingold SE, Barreiro LE, Massa GA, Diambra L, Whitty BR, Vaillancourt B, Lin H, Massa AN, Geoffroy M, Lundback S, DellaPenna D, Buell CR, Sharma SK, Marshall DF, Waugh R, Bryan GJ, Destefanis M, Nagy I, Milbourne D, Thomson SJ, Fiers M, Jacobs JM, Nielsen KL, Sønderkær M, Iovene M, Torres GA, Jiang J, Veilleux RE, Bachem CW, de Boer J, Borm T, Kloosterman B, van Eck H, Datema E, Hekkert Bt, Goverse A, van Ham RC, Visser RG. Potato Genome Sequencing Consortium, et al. Among authors: li y, li g, li r. Nature. 2011 Jul 10;475(7355):189-95. doi: 10.1038/nature10158. Nature. 2011. PMID: 21743474
Cloning and characterization of r3b; members of the r3 superfamily of late blight resistance genes show sequence and functional divergence.
Li G, Huang S, Guo X, Li Y, Yang Y, Guo Z, Kuang H, Rietman H, Bergervoet M, Vleeshouwers VG, van der Vossen EA, Qu D, Visser RG, Jacobsen E, Vossen JH. Li G, et al. Among authors: li y. Mol Plant Microbe Interact. 2011 Oct;24(10):1132-42. doi: 10.1094/MPMI-11-10-0276. Mol Plant Microbe Interact. 2011. PMID: 21649512 Free article.
Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus.
Lin K, Limpens E, Zhang Z, Ivanov S, Saunders DG, Mu D, Pang E, Cao H, Cha H, Lin T, Zhou Q, Shang Y, Li Y, Sharma T, van Velzen R, de Ruijter N, Aanen DK, Win J, Kamoun S, Bisseling T, Geurts R, Huang S. Lin K, et al. Among authors: li y. PLoS Genet. 2014 Jan;10(1):e1004078. doi: 10.1371/journal.pgen.1004078. Epub 2014 Jan 9. PLoS Genet. 2014. PMID: 24415955 Free PMC article.
A fine physical map of the rice chromosome 4.
Zhao Q, Zhang Y, Cheng Z, Chen M, Wang S, Feng Q, Huang Y, Li Y, Tang Y, Zhou B, Chen Z, Yu S, Zhu J, Hu X, Mu J, Ying K, Hao P, Zhang L, Lu Y, Zhang LS, Liu Y, Yu Z, Fan D, Weng Q, Chen L, Lu T, Liu X, Jia P, Sun T, Wu Y, Zhang Y, Lu Y, Li C, Wang R, Lei H, Li T, Hu H, Wu M, Zhang R, Guan J, Zhu J, Fu G, Gu M, Hong G, Xue Y, Wing R, Jiang J, Han B. Zhao Q, et al. Among authors: li c, li t, li y. Genome Res. 2002 May;12(5):817-23. doi: 10.1101/gr.48902. Genome Res. 2002. PMID: 11997348 Free PMC article.
A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity.
Qi J, Liu X, Shen D, Miao H, Xie B, Li X, Zeng P, Wang S, Shang Y, Gu X, Du Y, Li Y, Lin T, Yuan J, Yang X, Chen J, Chen H, Xiong X, Huang K, Fei Z, Mao L, Tian L, Städler T, Renner SS, Kamoun S, Lucas WJ, Zhang Z, Huang S. Qi J, et al. Among authors: li y, li x. Nat Genet. 2013 Dec;45(12):1510-5. doi: 10.1038/ng.2801. Epub 2013 Oct 20. Nat Genet. 2013. PMID: 24141363
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