Li S - Search Results

1

Expression of the readthrough transcript CiDRE in alveolar macrophages boosts SARS-CoV-2 susceptibility and promotes COVID-19 severity.

Mitsui Y, Suzuki T, Kuniyoshi K, Inamo J, Yamaguchi K, Komuro M, Watanabe J, Edamoto M, Li S, Kouno T, Oba S, Hosoya T, Masuhiro K, Naito Y, Koyama S, Sakaguchi N, Standley DM, Shin JW, Akira S, Yasuda S, Miyazaki Y, Kochi Y, Kumanogoh A, Okamoto T, Satoh T. Mitsui Y, et al. Among authors: li s. Immunity. 2023 Aug 8;56(8):1939-1954.e12. doi: 10.1016/j.immuni.2023.06.013. Epub 2023 Jul 12. Immunity. 2023. PMID: 37442134

2

A novel protein distance matrix based on the minimum arc-length between two amino-acid residues on the surface of a globular protein.

Hall D, Li S, Yamashita K, Azuma R, Carver JA, Standley DM. Hall D, et al. Among authors: li s. Biophys Chem. 2014 Jun;190-191:50-5. doi: 10.1016/j.bpc.2014.01.005. Epub 2014 Feb 13. Biophys Chem. 2014. PMID: 24589301

3

Quantifying sequence and structural features of protein-RNA interactions.

Li S, Yamashita K, Amada KM, Standley DM. Li S, et al. Nucleic Acids Res. 2014 Sep;42(15):10086-98. doi: 10.1093/nar/gku681. Epub 2014 Jul 25. Nucleic Acids Res. 2014. PMID: 25063293 Free PMC article.

4

RNA-LIM: a novel procedure for analyzing protein/single-stranded RNA propensity data with concomitant estimation of interface structure.

Hall D, Li S, Yamashita K, Azuma R, Carver JA, Standley DM. Hall D, et al. Among authors: li s. Anal Biochem. 2015 Mar 1;472:52-61. doi: 10.1016/j.ab.2014.11.004. Epub 2014 Dec 3. Anal Biochem. 2015. PMID: 25479604

5

TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a.

Nyati KK, Masuda K, Zaman MM, Dubey PK, Millrine D, Chalise JP, Higa M, Li S, Standley DM, Saito K, Hanieh H, Kishimoto T. Nyati KK, et al. Among authors: li s. Nucleic Acids Res. 2017 Mar 17;45(5):2687-2703. doi: 10.1093/nar/gkx064. Nucleic Acids Res. 2017. PMID: 28168301 Free PMC article.

6

Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus.

Sakakibara S, Arimori T, Yamashita K, Jinzai H, Motooka D, Nakamura S, Li S, Takeda K, Katayama J, El Hussien MA, Narazaki M, Tanaka T, Standley DM, Takagi J, Kikutani H. Sakakibara S, et al. Among authors: li s. Sci Rep. 2017 Nov 27;7(1):16428. doi: 10.1038/s41598-017-16681-y. Sci Rep. 2017. PMID: 29180749 Free PMC article.

7

Arid5a stabilizes OX40 mRNA in murine CD4⁺ T cells by recognizing a stem-loop structure in its 3'UTR.

Hanieh H, Masuda K, Metwally H, Chalise JP, Mohamed M, Nyati KK, Standley DM, Li S, Higa M, Zaman MM, Kishimoto T. Hanieh H, et al. Among authors: li s. Eur J Immunol. 2018 Apr;48(4):593-604. doi: 10.1002/eji.201747109. Epub 2018 Feb 5. Eur J Immunol. 2018. PMID: 29244194 Free article.

8

MAFFT-DASH: integrated protein sequence and structural alignment.

Rozewicki J, Li S, Amada KM, Standley DM, Katoh K. Rozewicki J, et al. Among authors: li s. Nucleic Acids Res. 2019 Jul 2;47(W1):W5-W10. doi: 10.1093/nar/gkz342. Nucleic Acids Res. 2019. PMID: 31062021 Free PMC article.

9

Structural Determinants of the APOBEC3G N-Terminal Domain for HIV-1 RNA Association.

Fukuda H, Li S, Sardo L, Smith JL, Yamashita K, Sarca AD, Shirakawa K, Standley DM, Takaori-Kondo A, Izumi T. Fukuda H, et al. Among authors: li s. Front Cell Infect Microbiol. 2019 May 21;9:129. doi: 10.3389/fcimb.2019.00129. eCollection 2019. Front Cell Infect Microbiol. 2019. PMID: 31165049 Free PMC article.

10

Structural Modeling of Lymphocyte Receptors and Their Antigens.

Li S, Wilamowski J, Teraguchi S, van Eerden FJ, Rozewicki J, Davila A, Xu Z, Katoh K, Standley DM. Li S, et al. Methods Mol Biol. 2019;2048:207-229. doi: 10.1007/978-1-4939-9728-2_17. Methods Mol Biol. 2019. PMID: 31396940

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