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Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.
Hu B, Canon S, Eloe-Fadrosh EA, Anubhav, Babinski M, Corilo Y, Davenport K, Duncan WD, Fagnan K, Flynn M, Foster B, Hays D, Huntemann M, Jackson EKP, Kelliher J, Li PE, Lo CC, Mans D, McCue LA, Mouncey N, Mungall CJ, Piehowski PD, Purvine SO, Smith M, Varghese NJ, Winston D, Xu Y, Chain PSG. Hu B, et al. Among authors: li pe. Front Bioinform. 2022 Jan 17;1:826370. doi: 10.3389/fbinf.2021.826370. eCollection 2021. Front Bioinform. 2022. PMID: 36303775 Free PMC article. Review.
Draft Genome Assembly of Acinetobacter baumannii ATCC 19606.
Davenport KW, Daligault HE, Minogue TD, Bruce DC, Chain PS, Coyne SR, Jaissle JG, Koroleva GI, Ladner JT, Li PE, Palacios GF, Scholz MB, Teshima H, Johnson SL. Davenport KW, et al. Among authors: li pe. Genome Announc. 2014 Aug 21;2(4):e00832-14. doi: 10.1128/genomeA.00832-14. Genome Announc. 2014. PMID: 25146140 Free PMC article.
Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets.
Dichosa AE, Davenport KW, Li PE, Ahmed SA, Daligault H, Gleasner CD, Kunde Y, McMurry K, Lo CC, Reitenga KG, Daughton AR, Shen X, Frietze S, Wang D, Johnson SL, Drautz-Moses DI, Schuster S, Chain PS, Han C. Dichosa AE, et al. Among authors: li pe. Genome Announc. 2015 Mar 19;3(2):e00132-15. doi: 10.1128/genomeA.00132-15. Genome Announc. 2015. PMID: 25792053 Free PMC article.
Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor.
Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, Chain PS. Johnson SL, et al. Among authors: li pe. Genome Announc. 2015 Apr 30;3(2):e00159-15. doi: 10.1128/genomeA.00159-15. Genome Announc. 2015. PMID: 25931592 Free PMC article.
Under-detection of endospore-forming Firmicutes in metagenomic data.
Filippidou S, Junier T, Wunderlin T, Lo CC, Li PE, Chain PS, Junier P. Filippidou S, et al. Among authors: li pe. Comput Struct Biotechnol J. 2015 Apr 25;13:299-306. doi: 10.1016/j.csbj.2015.04.002. eCollection 2015. Comput Struct Biotechnol J. 2015. PMID: 25973144 Free PMC article.
33 results