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A graph-based genome and pan-genome variation of the model plant Setaria.
He Q, Tang S, Zhi H, Chen J, Zhang J, Liang H, Alam O, Li H, Zhang H, Xing L, Li X, Zhang W, Wang H, Shi J, Du H, Wu H, Wang L, Yang P, Xing L, Yan H, Song Z, Liu J, Wang H, Tian X, Qiao Z, Feng G, Guo R, Zhu W, Ren Y, Hao H, Li M, Zhang A, Guo E, Yan F, Li Q, Liu Y, Tian B, Zhao X, Jia R, Feng B, Zhang J, Wei J, Lai J, Jia G, Purugganan M, Diao X. He Q, et al. Among authors: li h, li x, li m, li q. Nat Genet. 2023 Jul;55(7):1232-1242. doi: 10.1038/s41588-023-01423-w. Epub 2023 Jun 8. Nat Genet. 2023. PMID: 37291196 Free PMC article.
Graph pangenome captures missing heritability and empowers tomato breeding.
Zhou Y, Zhang Z, Bao Z, Li H, Lyu Y, Zan Y, Wu Y, Cheng L, Fang Y, Wu K, Zhang J, Lyu H, Lin T, Gao Q, Saha S, Mueller L, Fei Z, Städler T, Xu S, Zhang Z, Speed D, Huang S. Zhou Y, et al. Among authors: li h. Nature. 2022 Jun;606(7914):527-534. doi: 10.1038/s41586-022-04808-9. Epub 2022 Jun 8. Nature. 2022. PMID: 35676474 Free PMC article.
Genome evolution and diversity of wild and cultivated potatoes.
Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Tang D, et al. Among authors: li d, li h. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x. Epub 2022 Jun 8. Nature. 2022. PMID: 35676481 Free PMC article.
Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species.
Li N, He Q, Wang J, Wang B, Zhao J, Huang S, Yang T, Tang Y, Yang S, Aisimutuola P, Xu R, Hu J, Jia C, Ma K, Li Z, Jiang F, Gao J, Lan H, Zhou Y, Zhang X, Huang S, Fei Z, Wang H, Li H, Yu Q. Li N, et al. Among authors: li z, li h. Nat Genet. 2023 May;55(5):852-860. doi: 10.1038/s41588-023-01340-y. Epub 2023 Apr 6. Nat Genet. 2023. PMID: 37024581 Free PMC article.
Addendum: Genome evolution and diversity of wild and cultivated potatoes.
Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Tang D, et al. Among authors: li d, li h. Nature. 2022 Sep;609(7929):E14. doi: 10.1038/s41586-022-05298-5. Nature. 2022. PMID: 36100670 Free PMC article. No abstract available.
Genome architecture and tetrasomic inheritance of autotetraploid potato.
Bao Z, Li C, Li G, Wang P, Peng Z, Cheng L, Li H, Zhang Z, Li Y, Huang W, Ye M, Dong D, Cheng Z, VanderZaag P, Jacobsen E, Bachem CWB, Dong S, Zhang C, Huang S, Zhou Q. Bao Z, et al. Among authors: li c, li y, li g, li h. Mol Plant. 2022 Jul 4;15(7):1211-1226. doi: 10.1016/j.molp.2022.06.009. Epub 2022 Jun 22. Mol Plant. 2022. PMID: 35733345 Free article.
FLOWERING LOCUS T Improves Cucumber Adaptation to Higher Latitudes.
Wang S, Li H, Li Y, Li Z, Qi J, Lin T, Yang X, Zhang Z, Huang S. Wang S, et al. Among authors: li y, li z, li h. Plant Physiol. 2020 Feb;182(2):908-918. doi: 10.1104/pp.19.01215. Epub 2019 Dec 16. Plant Physiol. 2020. PMID: 31843803 Free PMC article.
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