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Exploration of Coding and Non-coding Variants in Cancer Using GenomePaint.
Zhou X, Wang J, Patel J, Valentine M, Shao Y, Newman S, Sioson E, Tian L, Liu Y, Brady SW, Flasch D, Ma X, Liu Y, Paul R, Edmonson MN, Rusch MC, Li C, Baker SJ, Easton J, Zhang J. Zhou X, et al. Among authors: li c. Cancer Cell. 2021 Jan 11;39(1):83-95.e4. doi: 10.1016/j.ccell.2020.12.011. Cancer Cell. 2021. PMID: 33434514 Free PMC article.
Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes.
Wang H, Diaz AK, Shaw TI, Li Y, Niu M, Cho JH, Paugh BS, Zhang Y, Sifford J, Bai B, Wu Z, Tan H, Zhou S, Hover LD, Tillman HS, Shirinifard A, Thiagarajan S, Sablauer A, Pagala V, High AA, Wang X, Li C, Baker SJ, Peng J. Wang H, et al. Among authors: li c, li y. Nat Commun. 2019 Aug 16;10(1):3718. doi: 10.1038/s41467-019-11661-4. Nat Commun. 2019. PMID: 31420543 Free PMC article.
Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X.
Liu Y, Li C, Shen S, Chen X, Szlachta K, Edmonson MN, Shao Y, Ma X, Hyle J, Wright S, Ju B, Rusch MC, Liu Y, Li B, Macias M, Tian L, Easton J, Qian M, Yang JJ, Hu S, Look AT, Zhang J. Liu Y, et al. Among authors: li c, li b. Nat Genet. 2020 Aug;52(8):811-818. doi: 10.1038/s41588-020-0659-5. Epub 2020 Jul 6. Nat Genet. 2020. PMID: 32632335 Free PMC article.
Acute depletion of CTCF rewires genome-wide chromatin accessibility.
Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Xu B, et al. Among authors: li c. Genome Biol. 2021 Aug 24;22(1):244. doi: 10.1186/s13059-021-02466-0. Genome Biol. 2021. PMID: 34429148 Free PMC article.
A Novel Locus on 6p21.2 for Cancer Treatment-Induced Cardiac Dysfunction Among Childhood Cancer Survivors.
Sapkota Y, Ehrhardt MJ, Qin N, Wang Z, Liu Q, Qiu W, Shelton K, Shao Y, Plyler E, Mulder HL, Easton J, Michael JR, Burridge PW, Wang X, Wilson CL, Jefferies JL, Chow EJ, Oeffinger KC, Morton LM, Li C, Yang JJ, Zhang J, Bhatia S, Mulrooney DA, Hudson MM, Robison LL, Armstrong GT, Yasui Y. Sapkota Y, et al. Among authors: li c. J Natl Cancer Inst. 2022 Aug 8;114(8):1109-1116. doi: 10.1093/jnci/djac115. J Natl Cancer Inst. 2022. PMID: 35698272 Free PMC article.
Malignant Progression of an Ancestral Bone Marrow Clone Harboring a CIC-NUTM2A Fusion in Isolated Myeloid Sarcoma.
Kamens JL, Dang J, Shaw TI, Gout AM, Newman S, Hagiwara K, Smith AMR, Obermayer AN, Aldridge S, Ma J, Zhang Y, Wu G, Leventaki V, Santiago T, Raimondi S, Nakitandwe J, Pappo A, Li C, Zhang J, Gruber TA. Kamens JL, et al. Among authors: li c. Mol Cancer Res. 2023 Apr 1;21(4):301-306. doi: 10.1158/1541-7786.MCR-22-0544. Mol Cancer Res. 2023. PMID: 36637394
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