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Nanopore RNA Sequencing Analysis.
Leonardi T, Leger A. Leonardi T, et al. Methods Mol Biol. 2021;2284:569-578. doi: 10.1007/978-1-0716-1307-8_31. Methods Mol Biol. 2021. PMID: 33835464
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.
Clark MB, Mercer TR, Bussotti G, Leonardi T, Haynes KR, Crawford J, Brunck ME, Cao KA, Thomas GP, Chen WY, Taft RJ, Nielsen LK, Enright AJ, Mattick JS, Dinger ME. Clark MB, et al. Among authors: leonardi t. Nat Methods. 2015 Apr;12(4):339-42. doi: 10.1038/nmeth.3321. Epub 2015 Mar 9. Nat Methods. 2015. PMID: 25751143
Improved definition of the mouse transcriptome via targeted RNA sequencing.
Bussotti G, Leonardi T, Clark MB, Mercer TR, Crawford J, Malquori L, Notredame C, Dinger ME, Mattick JS, Enright AJ. Bussotti G, et al. Among authors: leonardi t. Genome Res. 2016 May;26(5):705-16. doi: 10.1101/gr.199760.115. Genome Res. 2016. PMID: 27197243 Free PMC article.
RNA modifications detection by comparative Nanopore direct RNA sequencing.
Leger A, Amaral PP, Pandolfini L, Capitanchik C, Capraro F, Miano V, Migliori V, Toolan-Kerr P, Sideri T, Enright AJ, Tzelepis K, van Werven FJ, Luscombe NM, Barbieri I, Ule J, Fitzgerald T, Birney E, Leonardi T, Kouzarides T. Leger A, et al. Among authors: leonardi t. Nat Commun. 2021 Dec 10;12(1):7198. doi: 10.1038/s41467-021-27393-3. Nat Commun. 2021. PMID: 34893601 Free PMC article.
Nanopore ReCappable sequencing maps SARS-CoV-2 5' capping sites and provides new insights into the structure of sgRNAs.
Ugolini C, Mulroney L, Leger A, Castelli M, Criscuolo E, Williamson MK, Davidson AD, Almuqrin A, Giambruno R, Jain M, Frigè G, Olsen H, Tzertzinis G, Schildkraut I, Wulf MG, Corrêa IR, Ettwiller L, Clementi N, Clementi M, Mancini N, Birney E, Akeson M, Nicassio F, Matthews DA, Leonardi T. Ugolini C, et al. Among authors: leonardi t. Nucleic Acids Res. 2022 Apr 8;50(6):3475-3489. doi: 10.1093/nar/gkac144. Nucleic Acids Res. 2022. PMID: 35244721 Free PMC article.
Detection of ribonucleotides embedded in DNA by Nanopore sequencing.
Grasso L, Fonzino A, Manzari C, Leonardi T, Picardi E, Gissi C, Lazzaro F, Pesole G, Muzi-Falconi M. Grasso L, et al. Among authors: leonardi t. Commun Biol. 2024 Apr 23;7(1):491. doi: 10.1038/s42003-024-06077-w. Commun Biol. 2024. PMID: 38654143 Free PMC article.
ISEV position paper: extracellular vesicle RNA analysis and bioinformatics.
Hill AF, Pegtel DM, Lambertz U, Leonardi T, O'Driscoll L, Pluchino S, Ter-Ovanesyan D, Nolte-'t Hoen EN. Hill AF, et al. Among authors: leonardi t. J Extracell Vesicles. 2013 Dec 23;2. doi: 10.3402/jev.v2i0.22859. eCollection 2013. J Extracell Vesicles. 2013. PMID: 24376909 Free PMC article.
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