Leigh JW - Search Results

1

Evaluating phylogenetic congruence in the post-genomic era.

Leigh JW, Lapointe FJ, Lopez P, Bapteste E. Leigh JW, et al. Genome Biol Evol. 2011;3:571-87. doi: 10.1093/gbe/evr050. Epub 2011 Jun 28. Genome Biol Evol. 2011. PMID: 21712432 Free PMC article. Review.

2

Let them fall where they may: congruence analysis in massive phylogenetically messy data sets.

Leigh JW, Schliep K, Lopez P, Bapteste E. Leigh JW, et al. Mol Biol Evol. 2011 Oct;28(10):2773-85. doi: 10.1093/molbev/msr110. Epub 2011 Apr 27. Mol Biol Evol. 2011. PMID: 21527387

3

Visualizing and assessing phylogenetic congruence of core gene sets: a case study of the gamma-proteobacteria.

Susko E, Leigh J, Doolittle WF, Bapteste E. Susko E, et al. Mol Biol Evol. 2006 May;23(5):1019-30. doi: 10.1093/molbev/msj113. Epub 2006 Feb 22. Mol Biol Evol. 2006. PMID: 16495350

4

Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny.

Bapteste E, Susko E, Leigh J, Ruiz-Trillo I, Bucknam J, Doolittle WF. Bapteste E, et al. Mol Biol Evol. 2008 Jan;25(1):83-91. doi: 10.1093/molbev/msm229. Epub 2007 Oct 16. Mol Biol Evol. 2008. PMID: 17940208

5

Phylogenetic reconstruction and lateral gene transfer.

Bapteste E, Boucher Y, Leigh J, Doolittle WF. Bapteste E, et al. Trends Microbiol. 2004 Sep;12(9):406-11. doi: 10.1016/j.tim.2004.07.002. Trends Microbiol. 2004. PMID: 15337161 Review.

6

Network analyses structure genetic diversity in independent genetic worlds.

Halary S, Leigh JW, Cheaib B, Lopez P, Bapteste E. Halary S, et al. Among authors: leigh jw. Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):127-32. doi: 10.1073/pnas.0908978107. Epub 2009 Dec 10. Proc Natl Acad Sci U S A. 2010. PMID: 20007769 Free PMC article.

7

Do orthologous gene phylogenies really support tree-thinking?

Bapteste E, Susko E, Leigh J, MacLeod D, Charlebois RL, Doolittle WF. Bapteste E, et al. BMC Evol Biol. 2005 May 24;5:33. doi: 10.1186/1471-2148-5-33. BMC Evol Biol. 2005. PMID: 15913459 Free PMC article.

8

Testing congruence in phylogenomic analysis.

Leigh JW, Susko E, Baumgartner M, Roger AJ. Leigh JW, et al. Syst Biol. 2008 Feb;57(1):104-15. doi: 10.1080/10635150801910436. Syst Biol. 2008. PMID: 18288620

9

Invasion and persistence of a selfish gene in the Cnidaria.

Goddard MR, Leigh J, Roger AJ, Pemberton AJ. Goddard MR, et al. PLoS One. 2006 Dec 20;1(1):e3. doi: 10.1371/journal.pone.0000003. PLoS One. 2006. PMID: 17183657 Free PMC article.

10

Monte Carlo Strategies for Selecting Parameter Values in Simulation Experiments.

Leigh JW, Bryant D. Leigh JW, et al. Syst Biol. 2015 Sep;64(5):741-51. doi: 10.1093/sysbio/syv030. Epub 2015 May 25. Syst Biol. 2015. PMID: 26012871

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