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Transparency and reproducibility in artificial intelligence.
Haibe-Kains B, Adam GA, Hosny A, Khodakarami F; Massive Analysis Quality Control (MAQC) Society Board of Directors; Waldron L, Wang B, McIntosh C, Goldenberg A, Kundaje A, Greene CS, Broderick T, Hoffman MM, Leek JT, Korthauer K, Huber W, Brazma A, Pineau J, Tibshirani R, Hastie T, Ioannidis JPA, Quackenbush J, Aerts HJWL. Haibe-Kains B, et al. Among authors: leek jt. Nature. 2020 Oct;586(7829):E14-E16. doi: 10.1038/s41586-020-2766-y. Epub 2020 Oct 14. Nature. 2020. PMID: 33057217 Free PMC article.
Test set bias affects reproducibility of gene signatures.
Patil P, Bachant-Winner PO, Haibe-Kains B, Leek JT. Patil P, et al. Among authors: leek jt. Bioinformatics. 2015 Jul 15;31(14):2318-23. doi: 10.1093/bioinformatics/btv157. Epub 2015 Mar 18. Bioinformatics. 2015. PMID: 25788628 Free PMC article.
The practical effect of batch on genomic prediction.
Parker HS, Leek JT. Parker HS, et al. Among authors: leek jt. Stat Appl Genet Mol Biol. 2012;11(3):Article 10. doi: 10.1515/1544-6115.1766. Stat Appl Genet Mol Biol. 2012. PMID: 22611599 Free PMC article.
Statistics. What is the question?
Leek JT, Peng RD. Leek JT, et al. Science. 2015 Mar 20;347(6228):1314-5. doi: 10.1126/science.aaa6146. Epub 2015 Feb 26. Science. 2015. PMID: 25721505 No abstract available.
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space.
Schatz MC, Philippakis AA, Afgan E, Banks E, Carey VJ, Carroll RJ, Culotti A, Ellrott K, Goecks J, Grossman RL, Hall IM, Hansen KD, Lawson J, Leek JT, Luria AO, Mosher S, Morgan M, Nekrutenko A, O'Connor BD, Osborn K, Paten B, Patterson C, Tan FJ, Taylor CO, Vessio J, Waldron L, Wang T, Wuichet K. Schatz MC, et al. Among authors: leek jt. Cell Genom. 2022 Jan 12;2(1):100085. doi: 10.1016/j.xgen.2021.100085. Epub 2022 Jan 13. Cell Genom. 2022. PMID: 35199087 Free PMC article.
84 results