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A predicted CRISPR-mediated symbiosis between uncultivated archaea.
Esser SP, Rahlff J, Zhao W, Predl M, Plewka J, Sures K, Wimmer F, Lee J, Adam PS, McGonigle J, Turzynski V, Banas I, Schwank K, Krupovic M, Bornemann TLV, Figueroa-Gonzalez PA, Jarett J, Rattei T, Amano Y, Blaby IK, Cheng JF, Brazelton WJ, Beisel CL, Woyke T, Zhang Y, Probst AJ. Esser SP, et al. Among authors: lee j. Nat Microbiol. 2023 Sep;8(9):1619-1633. doi: 10.1038/s41564-023-01439-2. Epub 2023 Jul 27. Nat Microbiol. 2023. PMID: 37500801
Expansion of the global RNA virome reveals diverse clades of bacteriophages.
Neri U, Wolf YI, Roux S, Camargo AP, Lee B, Kazlauskas D, Chen IM, Ivanova N, Zeigler Allen L, Paez-Espino D, Bryant DA, Bhaya D; RNA Virus Discovery Consortium; Krupovic M, Dolja VV, Kyrpides NC, Koonin EV, Gophna U. Neri U, et al. Cell. 2022 Oct 13;185(21):4023-4037.e18. doi: 10.1016/j.cell.2022.08.023. Epub 2022 Sep 28. Cell. 2022. PMID: 36174579 Free article.
Decontamination of MDA reagents for single cell whole genome amplification.
Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng JF. Woyke T, et al. Among authors: lee j. PLoS One. 2011;6(10):e26161. doi: 10.1371/journal.pone.0026161. Epub 2011 Oct 20. PLoS One. 2011. PMID: 22028825 Free PMC article.
Next generation sequencing data of a defined microbial mock community.
Singer E, Andreopoulos B, Bowers RM, Lee J, Deshpande S, Chiniquy J, Ciobanu D, Klenk HP, Zane M, Daum C, Clum A, Cheng JF, Copeland A, Woyke T. Singer E, et al. Among authors: lee j. Sci Data. 2016 Sep 27;3:160081. doi: 10.1038/sdata.2016.81. Sci Data. 2016. PMID: 27673566 Free PMC article.
A pipeline for targeted metagenomics of environmental bacteria.
Grieb A, Bowers RM, Oggerin M, Goudeau D, Lee J, Malmstrom RR, Woyke T, Fuchs BM. Grieb A, et al. Among authors: lee j. Microbiome. 2020 Feb 15;8(1):21. doi: 10.1186/s40168-020-0790-7. Microbiome. 2020. PMID: 32061258 Free PMC article.
Primer and platform effects on 16S rRNA tag sequencing.
Tremblay J, Singh K, Fern A, Kirton ES, He S, Woyke T, Lee J, Chen F, Dangl JL, Tringe SG. Tremblay J, et al. Among authors: lee j. Front Microbiol. 2015 Aug 4;6:771. doi: 10.3389/fmicb.2015.00771. eCollection 2015. Front Microbiol. 2015. PMID: 26300854 Free PMC article.
Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium.
Džunková M, La Clair JJ, Tyml T, Doud D, Schulz F, Piquer-Esteban S, Porcel Sanchis D, Osborn A, Robinson D, Louie KB, Bowen BP, Bowers RM, Lee J, Arnau V, Díaz-Villanueva W, Stepanauskas R, Gosliner T, Date SV, Northen TR, Cheng JF, Burkart MD, Woyke T. Džunková M, et al. Among authors: lee j. Microbiome. 2023 Jun 13;11(1):130. doi: 10.1186/s40168-023-01560-8. Microbiome. 2023. PMID: 37312139 Free PMC article.
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution.
Bowers RM, Nayfach S, Schulz F, Jungbluth SP, Ruhl IA, Sheremet A, Lee J, Goudeau D, Eloe-Fadrosh EA, Stepanauskas R, Malmstrom RR, Kyrpides NC, Dunfield PF, Woyke T. Bowers RM, et al. Among authors: lee j. ISME J. 2022 May;16(5):1337-1347. doi: 10.1038/s41396-021-01178-4. Epub 2021 Dec 30. ISME J. 2022. PMID: 34969995 Free PMC article.
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