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Comparative Genome Analysis of 33 Chlamydia Strains Reveals Characteristic Features of Chlamydia Psittaci and Closely Related Species.
Pathogens. 2020 Oct 28;9(11):899. doi: 10.3390/pathogens9110899.
Pathogens. 2020.
PMID: 33126635
Free PMC article.
RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow.
Lataretu M, Hölzer M.
Lataretu M, et al.
Genes (Basel). 2020 Dec 10;11(12):1487. doi: 10.3390/genes11121487.
Genes (Basel). 2020.
PMID: 33322033
Free PMC article.
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A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes.
Mostajo NF, Lataretu M, Krautwurst S, Mock F, Desirò D, Lamkiewicz K, Collatz M, Schoen A, Weber F, Marz M, Hölzer M.
Mostajo NF, et al. Among authors: lataretu m.
NAR Genom Bioinform. 2020 Mar;2(1):lqz006. doi: 10.1093/nargab/lqz006. Epub 2019 Sep 30.
NAR Genom Bioinform. 2020.
PMID: 32289119
Free PMC article.
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HIV-1 Lethality and Loss of Env Protein Expression Induced by Single Synonymous Substitutions in the Virus Genome Intronic-Splicing Silencer.
Jordan-Paiz A, Nevot M, Lamkiewicz K, Lataretu M, Franco S, Marz M, Martinez MA.
Jordan-Paiz A, et al. Among authors: lataretu m.
J Virol. 2020 Oct 14;94(21):e01108-20. doi: 10.1128/JVI.01108-20. Print 2020 Oct 14.
J Virol. 2020.
PMID: 32817222
Free PMC article.
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BAFFR activates PI3K/AKT signaling in human naive but not in switched memory B cells through direct interactions with B cell antigen receptors.
Sevdali E, Block V, Lataretu M, Li H, Smulski CR, Briem JS, Heitz Y, Fischer B, Ramirez NJ, Grimbacher B, Jäck HM, Voll RE, Hölzer M, Schneider P, Eibel H.
Sevdali E, et al. Among authors: lataretu m.
Cell Rep. 2022 Jun 28;39(13):111019. doi: 10.1016/j.celrep.2022.111019.
Cell Rep. 2022.
PMID: 35767961
Free article.
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Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny.
Hunt M, Hinrichs AS, Anderson D, Karim L, Dearlove BL, Knaggs J, Constantinides B, Fowler PW, Rodger G, Street T, Lumley S, Webster H, Sanderson T, Ruis C, de Maio N, Amenga-Etego LN, Amuzu DSY, Avaro M, Awandare GA, Ayivor-Djanie R, Bashton M, Batty EM, Bediako Y, Belder D, Benedetti E, Bergthaler A, Boers SA, Campos J, Ampomah Carr RA, Cuba F, Dattero ME, Dejnirattisai W, Dilthey A, Duedu KO, Endler L, Engelmann I, Francisco NM, Fuchs J, Gnimpieba EZ, Groc S, Gyamfi J, Heemskerk D, Houwaart T, Hsiao NY, Huska M, Hölzer M, Iranzadeh A, Jarva H, Jeewandara C, Jolly B, Joseph R, Kant R, Ki KKK, Kurkela S, Lappalainen M, Lataretu M, Liu C, Malavige GN, Mashe T, Mongkolsapaya J, Montes B, Molina Mora JA, Morang'a CM, Mvula B, Nagarajan N, Nelson A, Ngoi JM, da Paixão JP, Panning M, Poklepovich T, Quashie PK, Ranasinghe D, Russo M, San JE, Sanderson ND, Scaria V, Screaton G, Sironen T, Sisay A, Smith D, Smura T, Supasa P, Suphavilai C, Swann J, Tegally H, Tegomoh B, Vapalahti O, Walker A, Wilkinson RJ, Williamson C; IMSSC2 Laboratory Network Consortium; de Oliveira T, Peto TE, Crook D, Corbett-Detig R, Iqbal Z.
Hunt M, et al. Among authors: lataretu m.
bioRxiv [Preprint]. 2024 Apr 30:2024.04.29.591666. doi: 10.1101/2024.04.29.591666.
bioRxiv. 2024.
PMID: 38746185
Free PMC article.
Preprint.
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Lessons learned: overcoming common challenges in reconstructing the SARS-CoV-2 genome from short-read sequencing data via CoVpipe2.
Lataretu M, Drechsel O, Kmiecinski R, Trappe K, Hölzer M, Fuchs S.
Lataretu M, et al.
F1000Res. 2024 Apr 16;12:1091. doi: 10.12688/f1000research.136683.1. eCollection 2023.
F1000Res. 2024.
PMID: 38716230
Free PMC article.
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