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Page 1
Breedbase: a digital ecosystem for modern plant breeding.
Morales N, Ogbonna AC, Ellerbrock BJ, Bauchet GJ, Tantikanjana T, Tecle IY, Powell AF, Lyon D, Menda N, Simoes CC, Saha S, Hosmani P, Flores M, Panitz N, Preble RS, Agbona A, Rabbi I, Kulakow P, Peteti P, Kawuki R, Esuma W, Kanaabi M, Chelangat DM, Uba E, Olojede A, Onyeka J, Shah T, Karanja M, Egesi C, Tufan H, Paterne A, Asfaw A, Jannink JL, Wolfe M, Birkett CL, Waring DJ, Hershberger JM, Gore MA, Robbins KR, Rife T, Courtney C, Poland J, Arnaud E, Laporte MA, Kulembeka H, Salum K, Mrema E, Brown A, Bayo S, Uwimana B, Akech V, Yencho C, de Boeck B, Campos H, Swennen R, Edwards JD, Mueller LA. Morales N, et al. Among authors: laporte ma. G3 (Bethesda). 2022 Jul 6;12(7):jkac078. doi: 10.1093/g3journal/jkac078. G3 (Bethesda). 2022. PMID: 35385099 Free PMC article.
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.
Cooper L, Meier A, Laporte MA, Elser JL, Mungall C, Sinn BT, Cavaliere D, Carbon S, Dunn NA, Smith B, Qu B, Preece J, Zhang E, Todorovic S, Gkoutos G, Doonan JH, Stevenson DW, Arnaud E, Jaiswal P. Cooper L, et al. Among authors: laporte ma. Nucleic Acids Res. 2018 Jan 4;46(D1):D1168-D1180. doi: 10.1093/nar/gkx1152. Nucleic Acids Res. 2018. PMID: 29186578 Free PMC article.
BrAPI-an application programming interface for plant breeding applications.
Selby P, Abbeloos R, Backlund JE, Basterrechea Salido M, Bauchet G, Benites-Alfaro OE, Birkett C, Calaminos VC, Carceller P, Cornut G, Vasques Costa B, Edwards JD, Finkers R, Yanxin Gao S, Ghaffar M, Glaser P, Guignon V, Hok P, Kilian A, König P, Lagare JEB, Lange M, Laporte MA, Larmande P, LeBauer DS, Lyon DA, Marshall DS, Matthews D, Milne I, Mistry N, Morales N, Mueller LA, Neveu P, Papoutsoglou E, Pearce B, Perez-Masias I, Pommier C, Ramírez-González RH, Rathore A, Raquel AM, Raubach S, Rife T, Robbins K, Rouard M, Sarma C, Scholz U, Sempéré G, Shaw PD, Simon R, Soldevilla N, Stephen G, Sun Q, Tovar C, Uszynski G, Verouden M; BrAPI consortium. Selby P, et al. Among authors: laporte ma. Bioinformatics. 2019 Oct 15;35(20):4147-4155. doi: 10.1093/bioinformatics/btz190. Bioinformatics. 2019. PMID: 30903186 Free PMC article.
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems.
Arnaud E, Laporte MA, Kim S, Aubert C, Leonelli S, Miro B, Cooper L, Jaiswal P, Kruseman G, Shrestha R, Buttigieg PL, Mungall CJ, Pietragalla J, Agbona A, Muliro J, Detras J, Hualla V, Rathore A, Das RR, Dieng I, Bauchet G, Menda N, Pommier C, Shaw F, Lyon D, Mwanzia L, Juarez H, Bonaiuti E, Chiputwa B, Obileye O, Auzoux S, Yeumo ED, Mueller LA, Silverstein K, Lafargue A, Antezana E, Devare M, King B. Arnaud E, et al. Among authors: laporte ma. Patterns (N Y). 2020 Sep 25;1(7):100105. doi: 10.1016/j.patter.2020.100105. eCollection 2020 Oct 9. Patterns (N Y). 2020. PMID: 33205138 Free PMC article.
Connecting data for consumer preferences, food quality, and breeding in support of market-oriented breeding of root, tuber, and banana crops.
Arnaud E, Menda N, Tran T, Asiimwe A, Kanaabi M, Meghar K, Forsythe L, Kawuki R, Ellebrock B, Kayondo IS, Agbona A, Zhang X, Mendes T, Laporte MA, Nakitto M, Ssali RT, Asfaw A, Uwimana B, Ogbete CE, Makunde G, Maraval I, Mueller LA, Bouniol A, Fauvelle E, Dufour D. Arnaud E, et al. Among authors: laporte ma. J Sci Food Agric. 2023 May 24. doi: 10.1002/jsfa.12710. Online ahead of print. J Sci Food Agric. 2023. PMID: 37226655 Review.
ClimMob: Software to support experimental citizen science in agriculture.
Quirós C, de Sousa K, Steinke J, Madriz B, Laporte MA, Arnaud E, Manners R, Ortiz-Crespo B, Müller A, van Etten J. Quirós C, et al. Among authors: laporte ma. Comput Electron Agric. 2024 Feb;217:None. doi: 10.1016/j.compag.2023.108539. Comput Electron Agric. 2024. PMID: 38343602 Free PMC article.
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, Elsik CG, Farmer A, Ficklin SP, Grant D, Grau E, Herndon N, Hu ZL, Humann J, Jaiswal P, Jonquet C, Laporte MA, Larmande P, Lazo G, McCarthy F, Menda N, Mungall CJ, Munoz-Torres MC, Naithani S, Nelson R, Nesdill D, Park C, Reecy J, Reiser L, Sanderson LA, Sen TZ, Staton M, Subramaniam S, Tello-Ruiz MK, Unda V, Unni D, Wang L, Ware D, Wegrzyn J, Williams J, Woodhouse M, Yu J, Main D. Harper L, et al. Among authors: laporte ma. Database (Oxford). 2018 Jan 1;2018:bay088. doi: 10.1093/database/bay088. Database (Oxford). 2018. PMID: 30239679 Free PMC article.
Ontologies for increasing the FAIRness of plant research data.
Dumschott K, Dörpholz H, Laporte MA, Brilhaus D, Schrader A, Usadel B, Neumann S, Arnaud E, Kranz A. Dumschott K, et al. Among authors: laporte ma. Front Plant Sci. 2023 Nov 30;14:1279694. doi: 10.3389/fpls.2023.1279694. eCollection 2023. Front Plant Sci. 2023. PMID: 38098789 Free PMC article. Review.
GreenPhylDB v2.0: comparative and functional genomics in plants.
Rouard M, Guignon V, Aluome C, Laporte MA, Droc G, Walde C, Zmasek CM, Périn C, Conte MG. Rouard M, et al. Among authors: laporte ma. Nucleic Acids Res. 2011 Jan;39(Database issue):D1095-102. doi: 10.1093/nar/gkq811. Epub 2010 Sep 22. Nucleic Acids Res. 2011. PMID: 20864446 Free PMC article.
17 results