Lambrughi M - Search Results

1

Hybrid Voronoi diagrams, their computation and reduction for applications in computational biochemistry.

Manak M, Zemek M, Szkandera J, Kolingerova I, Papaleo E, Lambrughi M. Manak M, et al. Among authors: lambrughi m. J Mol Graph Model. 2017 Jun;74:225-233. doi: 10.1016/j.jmgm.2017.03.018. Epub 2017 Apr 4. J Mol Graph Model. 2017. PMID: 28458001

2

Intramolecular interactions stabilizing compact conformations of the intrinsically disordered kinase-inhibitor domain of Sic1: a molecular dynamics investigation.

Lambrughi M, Papaleo E, Testa L, Brocca S, De Gioia L, Grandori R. Lambrughi M, et al. Front Physiol. 2012 Nov 22;3:435. doi: 10.3389/fphys.2012.00435. eCollection 2012. Front Physiol. 2012. PMID: 23189058 Free PMC article.

3

The conformational ensemble of the disordered and aggregation-protective 182-291 region of ataxin-3.

Invernizzi G, Lambrughi M, Regonesi ME, Tortora P, Papaleo E. Invernizzi G, et al. Among authors: lambrughi m. Biochim Biophys Acta. 2013 Nov;1830(11):5236-47. doi: 10.1016/j.bbagen.2013.07.007. Epub 2013 Jul 25. Biochim Biophys Acta. 2013. PMID: 23891935

4

PyInteraph: a framework for the analysis of interaction networks in structural ensembles of proteins.

Tiberti M, Invernizzi G, Lambrughi M, Inbar Y, Schreiber G, Papaleo E. Tiberti M, et al. Among authors: lambrughi m. J Chem Inf Model. 2014 May 27;54(5):1537-51. doi: 10.1021/ci400639r. Epub 2014 Apr 17. J Chem Inf Model. 2014. PMID: 24702124

5

Communication routes in ARID domains between distal residues in helix 5 and the DNA-binding loops.

Invernizzi G, Tiberti M, Lambrughi M, Lindorff-Larsen K, Papaleo E. Invernizzi G, et al. Among authors: lambrughi m. PLoS Comput Biol. 2014 Sep 4;10(9):e1003744. doi: 10.1371/journal.pcbi.1003744. eCollection 2014 Sep. PLoS Comput Biol. 2014. PMID: 25187961 Free PMC article.

6

E2 superfamily of ubiquitin-conjugating enzymes: constitutively active or activated through phosphorylation in the catalytic cleft.

Valimberti I, Tiberti M, Lambrughi M, Sarcevic B, Papaleo E. Valimberti I, et al. Among authors: lambrughi m. Sci Rep. 2015 Oct 14;5:14849. doi: 10.1038/srep14849. Sci Rep. 2015. PMID: 26463729 Free PMC article.

7

The Role of Protein Loops and Linkers in Conformational Dynamics and Allostery.

Papaleo E, Saladino G, Lambrughi M, Lindorff-Larsen K, Gervasio FL, Nussinov R. Papaleo E, et al. Among authors: lambrughi m. Chem Rev. 2016 Jun 8;116(11):6391-423. doi: 10.1021/acs.chemrev.5b00623. Epub 2016 Feb 18. Chem Rev. 2016. PMID: 26889708 Review.

8

DNA-binding protects p53 from interactions with cofactors involved in transcription-independent functions.

Lambrughi M, De Gioia L, Gervasio FL, Lindorff-Larsen K, Nussinov R, Urani C, Bruschi M, Papaleo E. Lambrughi M, et al. Nucleic Acids Res. 2016 Nov 2;44(19):9096-9109. doi: 10.1093/nar/gkw770. Epub 2016 Sep 6. Nucleic Acids Res. 2016. PMID: 27604871 Free PMC article.

9

The Mutational Landscape of the Oncogenic MZF1 SCAN Domain in Cancer.

Nygaard M, Terkelsen T, Vidas Olsen A, Sora V, Salamanca Viloria J, Rizza F, Bergstrand-Poulsen S, Di Marco M, Vistesen M, Tiberti M, Lambrughi M, Jäättelä M, Kallunki T, Papaleo E. Nygaard M, et al. Among authors: lambrughi m. Front Mol Biosci. 2016 Dec 15;3:78. doi: 10.3389/fmolb.2016.00078. eCollection 2016. Front Mol Biosci. 2016. PMID: 28018905 Free PMC article.

10

Absence of Neurofibromin Induces an Oncogenic Metabolic Switch via Mitochondrial ERK-Mediated Phosphorylation of the Chaperone TRAP1.

Masgras I, Ciscato F, Brunati AM, Tibaldi E, Indraccolo S, Curtarello M, Chiara F, Cannino G, Papaleo E, Lambrughi M, Guzzo G, Gambalunga A, Pizzi M, Guzzardo V, Rugge M, Vuljan SE, Calabrese F, Bernardi P, Rasola A. Masgras I, et al. Among authors: lambrughi m. Cell Rep. 2017 Jan 17;18(3):659-672. doi: 10.1016/j.celrep.2016.12.056. Cell Rep. 2017. PMID: 28099845 Free article.

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