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DLRS: gene tree evolution in light of a species tree.
Sjöstrand J, Sennblad B, Arvestad L, Lagergren J. Sjöstrand J, et al. Among authors: lagergren j. Bioinformatics. 2012 Nov 15;28(22):2994-5. doi: 10.1093/bioinformatics/bts548. Epub 2012 Sep 14. Bioinformatics. 2012. PMID: 22982573
GenPhyloData: realistic simulation of gene family evolution.
Sjöstrand J, Arvestad L, Lagergren J, Sennblad B. Sjöstrand J, et al. Among authors: lagergren j. BMC Bioinformatics. 2013 Jun 27;14:209. doi: 10.1186/1471-2105-14-209. BMC Bioinformatics. 2013. PMID: 23803001 Free PMC article.
Probabilistic inference of lateral gene transfer events.
Khan MA, Mahmudi O, Ullah I, Arvestad L, Lagergren J. Khan MA, et al. Among authors: lagergren j. BMC Bioinformatics. 2016 Nov 11;17(Suppl 14):431. doi: 10.1186/s12859-016-1268-2. BMC Bioinformatics. 2016. PMID: 28185583 Free PMC article.
Fast computation of distance estimators.
Elias I, Lagergren J. Elias I, et al. Among authors: lagergren j. BMC Bioinformatics. 2007 Mar 13;8:89. doi: 10.1186/1471-2105-8-89. BMC Bioinformatics. 2007. PMID: 17355623 Free PMC article.
Fastphylo: fast tools for phylogenetics.
Khan MA, Elias I, Sjölund E, Nylander K, Guimera RV, Schobesberger R, Schmitzberger P, Lagergren J, Arvestad L. Khan MA, et al. Among authors: lagergren j. BMC Bioinformatics. 2013 Nov 20;14:334. doi: 10.1186/1471-2105-14-334. BMC Bioinformatics. 2013. PMID: 24255987 Free PMC article.
Genome-wide survey for biologically functional pseudogenes.
Svensson O, Arvestad L, Lagergren J. Svensson O, et al. Among authors: lagergren j. PLoS Comput Biol. 2006 May;2(5):e46. doi: 10.1371/journal.pcbi.0020046. Epub 2006 May 5. PLoS Comput Biol. 2006. PMID: 16680195 Free PMC article.
666 results