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Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.
Milreu PV, Klein CC, Cottret L, Acuña V, Birmelé E, Borassi M, Junot C, Marchetti-Spaccamela A, Marino A, Stougie L, Jourdan F, Crescenzi P, Lacroix V, Sagot MF. Milreu PV, et al. Among authors: lacroix v. Bioinformatics. 2014 Jan 1;30(1):61-70. doi: 10.1093/bioinformatics/btt597. Epub 2013 Oct 27. Bioinformatics. 2014. PMID: 24167155 Free PMC article.
Modes and cuts in metabolic networks: complexity and algorithms.
Acuña V, Chierichetti F, Lacroix V, Marchetti-Spaccamela A, Sagot MF, Stougie L. Acuña V, et al. Among authors: lacroix v. Biosystems. 2009 Jan;95(1):51-60. doi: 10.1016/j.biosystems.2008.06.015. Epub 2008 Aug 3. Biosystems. 2009. PMID: 18722501 Review.
Motif search in graphs: application to metabolic networks.
Lacroix V, Fernandes CG, Sagot MF. Lacroix V, et al. IEEE/ACM Trans Comput Biol Bioinform. 2006 Oct-Dec;3(4):360-8. doi: 10.1109/TCBB.2006.55. IEEE/ACM Trans Comput Biol Bioinform. 2006. PMID: 17085845
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data.
Sacomoto GA, Kielbassa J, Chikhi R, Uricaru R, Antoniou P, Sagot MF, Peterlongo P, Lacroix V. Sacomoto GA, et al. Among authors: lacroix v. BMC Bioinformatics. 2012 Apr 19;13 Suppl 6(Suppl 6):S5. doi: 10.1186/1471-2105-13-S6-S5. BMC Bioinformatics. 2012. PMID: 22537044 Free PMC article.
Assessing the exceptionality of coloured motifs in networks.
Schbath S, Lacroix V, Sagot MF. Schbath S, et al. Among authors: lacroix v. EURASIP J Bioinform Syst Biol. 2009;2009(1):616234. doi: 10.1155/2009/616234. Epub 2009 Jan 26. EURASIP J Bioinform Syst Biol. 2009. PMID: 19190777 Free PMC article.
Exploration of the core metabolism of symbiotic bacteria.
Klein CC, Cottret L, Kielbassa J, Charles H, Gautier C, Ribeiro de Vasconcelos AT, Lacroix V, Sagot MF. Klein CC, et al. Among authors: lacroix v. BMC Genomics. 2012 Aug 31;13:438. doi: 10.1186/1471-2164-13-438. BMC Genomics. 2012. PMID: 22938206 Free PMC article.
100 results