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microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Zuffa S, Schmid R, Bauermeister A, P Gomes PW, Caraballo-Rodriguez AM, El Abiead Y, Aron AT, Gentry EC, Zemlin J, Meehan MJ, Avalon NE, Cichewicz RH, Buzun E, Terrazas MC, Hsu CY, Oles R, Ayala AV, Zhao J, Chu H, Kuijpers MCM, Jackrel SL, Tugizimana F, Nephali LP, Dubery IA, Madala NE, Moreira EA, Costa-Lotufo LV, Lopes NP, Rezende-Teixeira P, Jimenez PC, Rimal B, Patterson AD, Traxler MF, Pessotti RC, Alvarado-Villalobos D, Tamayo-Castillo G, Chaverri P, Escudero-Leyva E, Quiros-Guerrero LM, Bory AJ, Joubert J, Rutz A, Wolfender JL, Allard PM, Sichert A, Pontrelli S, Pullman BS, Bandeira N, Gerwick WH, Gindro K, Massana-Codina J, Wagner BC, Forchhammer K, Petras D, Aiosa N, Garg N, Liebeke M, Bourceau P, Kang KB, Gadhavi H, de Carvalho LPS, Silva Dos Santos M, Pérez-Lorente AI, Molina-Santiago C, Romero D, Franke R, Brönstrup M, Vera Ponce de León A, Pope PB, La Rosa SL, La Barbera G, Roager HM, Laursen MF, Hammerle F, Siewert B, Peintner U, Licona-Cassani C, Rodriguez-Orduña L, Rampler E, Hildebrand F, Koellensperger G, Schoeny H, Hohenwallner K, Panzenboeck L, Gregor R, O'Neill EC, Roxborough ET, Odoi J, Bale NJ, Ding S, Sinninghe Damsté JS, Guan XL, Cui JJ, Ju KS, Silva… See abstract for full author list ➔ Zuffa S, et al. Among authors: la rosa sl. Nat Microbiol. 2024 Feb;9(2):336-345. doi: 10.1038/s41564-023-01575-9. Epub 2024 Feb 5. Nat Microbiol. 2024. PMID: 38316926 Free PMC article.
Glycan processing in gut microbiomes.
La Rosa SL, Ostrowski MP, Vera-Ponce de León A, McKee LS, Larsbrink J, Eijsink VG, Lowe EC, Martens EC, Pope PB. La Rosa SL, et al. Curr Opin Microbiol. 2022 Jun;67:102143. doi: 10.1016/j.mib.2022.102143. Epub 2022 Mar 23. Curr Opin Microbiol. 2022. PMID: 35338908 Free article. Review.
Long-Read Metagenomics and CAZyme Discovery.
Ferrillo A, Kobel CM, Vera-Ponce de León A, La Rosa SL, Kunath BJ, Pope PB, Hagen LH. Ferrillo A, et al. Among authors: la rosa sl. Methods Mol Biol. 2023;2657:253-284. doi: 10.1007/978-1-0716-3151-5_19. Methods Mol Biol. 2023. PMID: 37149537
Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota.
Ostrowski MP, La Rosa SL, Kunath BJ, Robertson A, Pereira G, Hagen LH, Varghese NJ, Qiu L, Yao T, Flint G, Li J, McDonald SP, Buttner D, Pudlo NA, Schnizlein MK, Young VB, Brumer H, Schmidt TM, Terrapon N, Lombard V, Henrissat B, Hamaker B, Eloe-Fadrosh EA, Tripathi A, Pope PB, Martens EC. Ostrowski MP, et al. Among authors: la rosa sl. Nat Microbiol. 2022 Apr;7(4):556-569. doi: 10.1038/s41564-022-01093-0. Epub 2022 Apr 1. Nat Microbiol. 2022. PMID: 35365790 Free article.
Wood-Derived Dietary Fibers Promote Beneficial Human Gut Microbiota.
La Rosa SL, Kachrimanidou V, Buffetto F, Pope PB, Pudlo NA, Martens EC, Rastall RA, Gibson GR, Westereng B. La Rosa SL, et al. mSphere. 2019 Jan 23;4(1):e00554-18. doi: 10.1128/mSphere.00554-18. mSphere. 2019. PMID: 30674645 Free PMC article.
31 results