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Expansion of the global RNA virome reveals diverse clades of bacteriophages.
Neri U, Wolf YI, Roux S, Camargo AP, Lee B, Kazlauskas D, Chen IM, Ivanova N, Zeigler Allen L, Paez-Espino D, Bryant DA, Bhaya D; RNA Virus Discovery Consortium; Krupovic M, Dolja VV, Kyrpides NC, Koonin EV, Gophna U. Neri U, et al. Among authors: kyrpides nc. Cell. 2022 Oct 13;185(21):4023-4037.e18. doi: 10.1016/j.cell.2022.08.023. Epub 2022 Sep 28. Cell. 2022. PMID: 36174579 Free article.
The integrated microbial genomes system: an expanding comparative analysis resource.
Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, Kyrpides NC. Markowitz VM, et al. Among authors: kyrpides nc. Nucleic Acids Res. 2010 Jan;38(Database issue):D382-90. doi: 10.1093/nar/gkp887. Epub 2009 Oct 28. Nucleic Acids Res. 2010. PMID: 19864254 Free PMC article.
A call for standardized classification of metagenome projects.
Ivanova N, Tringe SG, Liolios K, Liu WT, Morrison N, Hugenholtz P, Kyrpides NC. Ivanova N, et al. Among authors: kyrpides nc. Environ Microbiol. 2010 Jul;12(7):1803-5. doi: 10.1111/j.1462-2920.2010.02270.x. Environ Microbiol. 2010. PMID: 20653767 Review. No abstract available.
IMG/M: the integrated metagenome data management and comparative analysis system.
Markowitz VM, Chen IM, Chu K, Szeto E, Palaniappan K, Grechkin Y, Ratner A, Jacob B, Pati A, Huntemann M, Liolios K, Pagani I, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC. Markowitz VM, et al. Among authors: kyrpides nc. Nucleic Acids Res. 2012 Jan;40(Database issue):D123-9. doi: 10.1093/nar/gkr975. Epub 2011 Nov 15. Nucleic Acids Res. 2012. PMID: 22086953 Free PMC article.
IMG: the Integrated Microbial Genomes database and comparative analysis system.
Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, Huntemann M, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC. Markowitz VM, et al. Among authors: kyrpides nc. Nucleic Acids Res. 2012 Jan;40(Database issue):D115-22. doi: 10.1093/nar/gkr1044. Nucleic Acids Res. 2012. PMID: 22194640 Free PMC article.
SOP for pathway inference in Integrated Microbial Genomes (IMG).
Anderson I, Chen A, Markowitz V, Kyrpides N, Ivanova N. Anderson I, et al. Stand Genomic Sci. 2011 Dec 31;5(3):420-3. doi: 10.4056/sigs.1193182. Epub 2011 Dec 22. Stand Genomic Sci. 2011. PMID: 22675591 Free PMC article.
690 results