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Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs.
Lee BD, Neri U, Roux S, Wolf YI, Camargo AP, Krupovic M; RNA Virus Discovery Consortium; Simmonds P, Kyrpides N, Gophna U, Dolja VV, Koonin EV. Lee BD, et al. Among authors: kyrpides n. Cell. 2023 Feb 2;186(3):646-661.e4. doi: 10.1016/j.cell.2022.12.039. Epub 2023 Jan 24. Cell. 2023. PMID: 36696902 Free PMC article.
Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov.
Miliotis G, Sengupta P, Hameed A, Chuvochina M, McDonagh F, Simpson AC, Parker CW, Singh NK, Rekha PD, Morris D, Raman K, Kyrpides NC, Hugenholtz P, Venkateswaran K. Miliotis G, et al. Among authors: kyrpides nc. mBio. 2024 Apr 10;15(4):e0018124. doi: 10.1128/mbio.00181-24. Epub 2024 Mar 13. mBio. 2024. PMID: 38477597 Free PMC article.
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert.
Nguyen TM, Pombubpa N, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen I-MA, Ivanova NN, Kyrpides NC, Harmon-Smith M, Eloe-Fadrosh EA, Pietrasiak N, Stajich JE, Hom EFY. Nguyen TM, et al. Among authors: kyrpides nc. Microbiol Resour Announc. 2024 Mar 12;13(3):e0098023. doi: 10.1128/mra.00980-23. Epub 2024 Feb 8. Microbiol Resour Announc. 2024. PMID: 38329355 Free PMC article.
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting.
Nguyen TM, Pombubpa N, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen I-MA, Ivanova NN, Kyrpides NC, Harmon-Smith M, Eloe-Fadrosh EA, Pietrasiak N, Stajich JE, Hom EFY. Nguyen TM, et al. Among authors: kyrpides nc. Microbiol Resour Announc. 2024 Feb 15;13(2):e0108023. doi: 10.1128/mra.01080-23. Epub 2024 Jan 8. Microbiol Resour Announc. 2024. PMID: 38189307 Free PMC article.
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.
Camargo AP, Call L, Roux S, Nayfach S, Huntemann M, Palaniappan K, Ratner A, Chu K, Mukherjeep S, Reddy TBK, Chen IA, Ivanova NN, Eloe-Fadrosh EA, Woyke T, Baltrus DA, Castañeda-Barba S, de la Cruz F, Funnell BE, Hall JPJ, Mukhopadhyay A, Rocha EPC, Stalder T, Top E, Kyrpides NC. Camargo AP, et al. Among authors: kyrpides nc. Nucleic Acids Res. 2024 Jan 5;52(D1):D164-D173. doi: 10.1093/nar/gkad964. Nucleic Acids Res. 2024. PMID: 37930866 Free PMC article.
Unraveling the functional dark matter through global metagenomics.
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E; Novel Metagenome Protein Families Consortium; Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC. Pavlopoulos GA, et al. Among authors: kyrpides nc. Nature. 2023 Oct;622(7983):594-602. doi: 10.1038/s41586-023-06583-7. Epub 2023 Oct 11. Nature. 2023. PMID: 37821698 Free PMC article.
704 results